Construct: ORF ccsbBroad304_11773

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013672.1_s304c1, BRDN0000409543
Derived from:
ccsbBroadEn_11773
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COG4 (25839)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11773
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25839 COG4 component of oligomeric gol... XM_024450224.1 83.7% 79.8% (many diffs)
2 human 25839 COG4 component of oligomeric gol... NM_001365426.1 82.2% 82.2% 1_342del;1516G>T;1716G>A
3 human 25839 COG4 component of oligomeric gol... NM_015386.3 67.4% 67.4% 1_768del;1942G>T;2142G>A
4 human 25839 COG4 component of oligomeric gol... NM_001195139.2 65.1% 65% (many diffs)
5 human 25839 COG4 component of oligomeric gol... NR_158212.1 54.7% (many diffs)
6 human 25839 COG4 component of oligomeric gol... XR_933267.1 53.6% (many diffs)
7 human 25839 COG4 component of oligomeric gol... XR_001751889.1 53% (many diffs)
8 mouse 102339 Cog4 component of oligomeric gol... NM_001310607.1 67.3% 71% (many diffs)
9 mouse 102339 Cog4 component of oligomeric gol... NM_133973.2 61% 64.4% (many diffs)
10 mouse 102339 Cog4 component of oligomeric gol... XR_387727.3 50.9% (many diffs)
11 mouse 102339 Cog4 component of oligomeric gol... XR_001778388.1 36% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gctggggaca gacatgagtg atcggagagc tgcagtcatc tttgcagata
121cacttactct tctgtttgaa gggattgccc gcattgtgga gacccaccag ccaatagtgg
181agacctatta tgggccaggg agactctata ccctgatcaa atatctgcag gtggaatgtg
241acagacaggt ggagaaggtg gtagacaagt tcatcaagca aagggactac caccagcagt
301tccggcatgt tcagaacaac ctgatgagaa attctacaac agaaaaaatc gaaccaagag
361aactggaccc catcctgact gaggtcaccc tgatgaatgc ccgcagtgag ctatacttac
421gcttcctcaa gaagaggatt agctctgatt ttgaggtggg agactccatg gcctcagagg
481aagtaaagca agagcaccag aagtgtctgg acaaactcct caataactgc cttttgagct
541gtaccatgca ggagctaatt ggcttatatg ttaccatgga ggagtacttc atgagggaga
601ctgtcaataa ggctgtggct ctggacacct atgagaaggg ccagctgaca tccagcatgg
661tggatgatgt cttctacatt gttaagaagt gcattgggcg ggctctgtcc agctccagca
721ttgactgtct ctgtgccatg atcaacctcg ccaccacaga gctggagtct gacttcaggg
781atgttctgtg taataagctg cggatgggct ttcctgccac caccttccag gacatccagc
841gcggggtgac aagtgccgtg aacatcatgc acagcagcct ccagcaaggc aaatttgaca
901caaaaggcat cgagagtact gacgaggcga agatgtcctt cctggtgact ctgaacaacg
961tggaagtctg cagtgaaaac atctccactc tgaagaagac actggagagt gactgcacca
1021agctcttcag ccagggcatt ggaggggagc aggcccaggc caagtttgac agctgccttt
1081ctgacttggc cgccgtgtcc aacaaattcc gagacctctt gcaggaaggg ctgacggagc
1141tcaacagcac agccatcaag ccacaggtgc agccttggat caacagcttt ttctccgtct
1201cccacaacat cgaggaggaa gaattcaatg actatgagtc caacgaccct tgggtacaac
1261agttcatcct taacctggag cagcaaatgg cagagttcaa ggccagcctg tccccggtca
1321tctacgacag cctaaccggc ctcatgacta gccttgttgc cgtcgagttg gagaaagtgg
1381tgctgaaatc cacctttaac cggctgggtg gtctgcagtt tgacaaggag ctgaggtcac
1441tcattgccta ccttaccacg gtgaccacct ggaccatccg agacaagttt gcccggctct
1501cccagatggc caccatcctc aatctggagc gggtgaccga gatcctcgat tactggggac
1561ccaattccgg cccattgacg tggcgcctca cccctgctga agtgcgccag gtgctggccc
1621tgcggataga cttccgcagt gaagatatca agaggctgcg cctgtaccca actttcttgt
1681acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1741gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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