Construct: ORF ccsbBroad304_11810

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017436.1_s304c1, BRDN0000408539
Derived from:
ccsbBroadEn_11810
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHTOP (26097)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11810
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26097 CHTOP chromatin target of PRMT1 NM_001206612.1 100% 100%
2 human 26097 CHTOP chromatin target of PRMT1 NM_015607.4 99.5% 99.5% 217_218insAGA
3 human 26097 CHTOP chromatin target of PRMT1 XM_017000993.2 81.5% 81.5% 403_404ins138
4 human 26097 CHTOP chromatin target of PRMT1 NM_001317077.1 81.1% 81.1% 217_218insAGA;400_401ins138
5 human 26097 CHTOP chromatin target of PRMT1 NM_001244664.1 30.2% 29.3% (many diffs)
6 mouse 66511 Chtop chromatin target of PRMT1 NM_001293776.1 97% 99.1% (many diffs)
7 mouse 66511 Chtop chromatin target of PRMT1 NM_001293777.1 96.6% 98.7% (many diffs)
8 mouse 66511 Chtop chromatin target of PRMT1 NM_001293782.1 87% 89.1% (many diffs)
9 mouse 66511 Chtop chromatin target of PRMT1 NM_023215.6 87% 89.1% (many diffs)
10 mouse 66511 Chtop chromatin target of PRMT1 NM_001293778.1 78.5% 80.7% (many diffs)
11 mouse 66511 Chtop chromatin target of PRMT1 NM_001293779.1 78.1% 80.3% (many diffs)
12 mouse 66511 Chtop chromatin target of PRMT1 NM_001293780.1 68.5% 70.6% (many diffs)
13 mouse 66511 Chtop chromatin target of PRMT1 NM_001293781.1 68.1% 70.2% (many diffs)
14 mouse 66511 Chtop chromatin target of PRMT1 XR_867226.2 33% (many diffs)
15 mouse 66511 Chtop chromatin target of PRMT1 XR_001783734.1 27.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
816
ORF length:
747
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggctgcacag tcagcgccga aagttgtgct aaaaagcacc accaagatgt
121ctctaaatga gcgctttact aatatgctga agaacaaaca gccgacgcca gtgaatattc
181gggcttcgat gcagcaacaa cagcagctag ccagtgccag aaacagaaga ctggcccagc
241agatggagaa tagaccctct gtccaggcag cattaaaact taagcagaag agcttaaagc
301agcgcctggg taagagtaac atccaggcac ggttaggccg acccataggg gccctggcca
361ggggagcaat cggaggacga ggcctaccca taatccagag aggcttgccc agaggaggac
421tacgtggggg acgtgccacc agaaccctac ttaggggcgg gatgtcactc cgaggtcaaa
481acctgctccg aggtggacga gccgtagctc cccgaatggg cttaagaaga ggtggtgttc
541gaggtcgtgg aggtcctggg agagggggcc tagggcgtgg agctatgggt cgtggcggaa
601tcggtggtag aggtcggggt atgataggtc ggggaagagg gggctttgga ggccgaggcc
661gaggccgtgg acgagggaga ggtgcccttg ctcgccctgt attgaccaag gagcagctgg
721acaaccaatt ggatgcatat atgtcgaaaa caaaaggaca cctggatgct gagttggatg
781cctacatggc gcagacagat cccgaaacca atgatttgcc aactttcttg tacaaagtgg
841ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
901ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

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