Construct: ORF ccsbBroad304_11836

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009884.1_s304c1, BRDN0000401047
Derived from:
ccsbBroadEn_11836
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC2 (27000)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11836
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27000 DNAJC2 DnaJ heat shock protein fam... NM_001129887.2 25.9% 24.5% 430_431ins47;455_1704del
2 human 27000 DNAJC2 DnaJ heat shock protein fam... NM_014377.3 23.7% 22.5% 430_431ins47;455_1863del
3 human 27000 DNAJC2 DnaJ heat shock protein fam... NM_001362667.1 12.1% 10.9% 0_1ins222;208_209ins47;233_1641del
4 mouse 22791 Dnajc2 DnaJ heat shock protein fam... NM_009584.4 23.8% 21.5% (many diffs)
5 mouse 22791 Dnajc2 DnaJ heat shock protein fam... XM_006535679.3 12.9% 10.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
567
ORF length:
501
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gcttctgcca agcgccgcgg acggccgggg caccgccatc acccacgctc
121tgacctctgc ctctacactc tgtcaagttg aacctgtggg aagatggttt gaagcttttg
181ttaagaggag aaacagaaat gcttctgcct cttttcagga actggaggat aagaaagagt
241tatccgagga atcagaagat gaagaattgc agttggaaga gtttcccatg ctgaaaacac
301ttgatcccaa agactggaag aaccaagatc attatgcagt tcttggactt ggccatgtga
361gatacaaggc tacacagaga cagatcaaag cagctcataa agcaatggtt ttaaaacatc
421acccagacaa acggaaagca gctggtgaac caataaaaga aggagataat gactacttca
481cttgcataac taaaggatcc ccaggtgatt cttatcagaa gctcatccta cagttaattc
541atcttatgaa atgttatctg atccagtgcc caactttctt gtacaaagtg gttggtaagc
601ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
661ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)