Construct: ORF ccsbBroad304_11857

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005058.1_s304c1, BRDN0000403538
Derived from:
ccsbBroadEn_11857
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF16 (27237)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11857
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27237 ARHGEF16 Rho guanine nucleotide exch... XM_024446454.1 99.7% 99.7% 244C>T;627T>C;813G>A
2 human 27237 ARHGEF16 Rho guanine nucleotide exch... XM_024446455.1 99.7% 99.7% 244C>T;627T>C;813G>A
3 human 27237 ARHGEF16 Rho guanine nucleotide exch... NM_014448.4 59.2% 59.2% (many diffs)
4 human 27237 ARHGEF16 Rho guanine nucleotide exch... XM_017001050.1 59.2% 59.2% (many diffs)
5 human 27237 ARHGEF16 Rho guanine nucleotide exch... XM_017001051.1 59.2% 59.2% (many diffs)
6 human 27237 ARHGEF16 Rho guanine nucleotide exch... XM_017001049.1 57.8% 57.8% (many diffs)
7 human 27237 ARHGEF16 Rho guanine nucleotide exch... XR_001737117.1 35.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt cgagatcctc acgtcggagt tctcctacca gcacagcctg agcatcctgg
121tggaggagtt cctgcagtcc aaggagctgc gggcgaccgt gacccagatg gagcaccacc
181acctcttctc caacatcctg gatgtcctgg gtgccagtca gaggttcttc gaggacctgg
241agcagcggca caaggcccag gtgctggtcg aggacatcag tgacatcctg gaggagcacg
301ctgagaagta cttccacccc tacatcgcct actgctccaa cgaggtctac caacagcgca
361cgctgcagaa gctgataagc agcaacgccg ccttccgaga ggccctgaga gagattgaga
421ggcggccggc gtgcgggggc ctgcccatgc tctccttcct gatcctcccc atgcagcggg
481tgacccggct gcccctcctg atggatacgc tctgcctcaa gacccagggc cactccgaaa
541ggtacaaggc tgccagccgt gcactgaagg ccatcagcaa gctggtgagg cagtgcaacg
601agggggccca caggatggag cgcatggagc agatgtacac gctgcacaca cagctggact
661tcagcaaggt caagtccctc ccactgatct ccgcctcccg gtggctgctg aagcgcggag
721agctgttctt agtggaagaa accggacttt ttcgaaaaat tgccagccgg ccaacgtgct
781accttttcct gttcaacgat gtcctggttg tgaccaagaa gaagagcgag gagagctaca
841tggtccagga ctacgcccag atgaaccaca tccaggtaga gaagatagag ccgtctgagc
901tccctctgcc cgggggcggc aaccgtagct cctccgtgcc ccaccccttc caggtgaccc
961tgcttcgcaa cagcgagggc cgccaggagc agctcctgct ctcctcggac tccgcgagtg
1021accgggcacg gtggatcgtg gcgctcacac acagtgagag acagtggcag ggcctctcca
1081gcaaaggaga cctgccccag gtggagatca ccaaggcctt cttcgcgaag caagcagacg
1141aggtcacact gcagcaggcg gacgtggtcc tggttctgca gcaggaggat gggtggctct
1201atggcgagag gctccgggac ggagagacgg gatggttccc cgaggacttt gcccgcttca
1261tcaccagccg tgtggccgtg gagggcaatg tccgcaggat ggagcgtctg cgggtggaga
1321cggacgtgta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1381tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
1441tcaacctctg gatta

Download FASTA (ORF) (Full)