Construct: ORF ccsbBroad304_11858
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007667.1_s304c1, BRDN0000411538
- Derived from:
- ccsbBroadEn_11858
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AHDC1 (27245)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11858
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | NM_001029882.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
2 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | NM_001371928.1 | 24.8% | 24.8% | 1_3612del;4806C>T |
3 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_005245848.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
4 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_005245849.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
5 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_005245850.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
6 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_005245851.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
7 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_005245852.3 | 24.8% | 24.8% | 1_3612del;4806C>T |
8 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_011541255.1 | 24.8% | 24.8% | 1_3612del;4806C>T |
9 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_011541256.2 | 24.8% | 24.8% | 1_3612del;4806C>T |
10 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_011541257.2 | 24.8% | 24.8% | 1_3612del;4806C>T |
11 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XM_024446461.1 | 24.8% | 24.8% | 1_3612del;4806C>T |
12 | human | 27245 | AHDC1 | AT-hook DNA binding motif c... | XR_946609.2 | 17.9% | 1_4679del;5873C>T;5877_6656del | |
13 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | NM_146155.3 | 22.4% | 24% | (many diffs) |
14 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538734.1 | 22.4% | 24% | (many diffs) |
15 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538736.2 | 22.4% | 24% | (many diffs) |
16 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538737.1 | 22.4% | 24% | (many diffs) |
17 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538738.3 | 22.4% | 24% | (many diffs) |
18 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538739.1 | 22.4% | 24% | (many diffs) |
19 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538740.1 | 22.4% | 24% | (many diffs) |
20 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538741.3 | 22.4% | 24% | (many diffs) |
21 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_006538742.1 | 22.4% | 24% | (many diffs) |
22 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_011250231.1 | 22.4% | 24% | (many diffs) |
23 | mouse | 230793 | Ahdc1 | AT hook, DNA binding motif,... | XM_017320159.1 | 22.4% | 24% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1263
- ORF length:
- 1197
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat ggactggaac gaggcatcat ctgcccccgg ctacaactgg aaccagagtg 121 tcctctttca gagtagctcc aagccgggcc gtggacggcg gaagaaggtg gacctgttcg 181 aggcctcaca tctgggcttc ccgacatccg cctctgccgc tgcctcaggc tacccatcca 241 aacggagcac tgggccccgg cagccgcgag gtggacgggg cggtggggcc tgctcagcca 301 agaaggagcg gggtggcgca gcggccaaag ccaagttcat ccccaagcca cagccagtca 361 acccactgtt ccaggacagt cctgacctcg gcctggacta ctatagcggg gacagcagca 421 tgtcaccact gccctcacag tcgagggcct tcggcgtggg agagcgagac ccctgtgact 481 tcataggacc ctactccatg aacccgtcca cgccttccga tggcaccttt ggccaaggct 541 tccactgcga ctcgcccagc ctgggtgctc ccgagcttga tggcaagcat ttcccaccgc 601 tggcccaccc acccacggtg tttgacgccg gcctgcagaa ggcatactcg cccacctgct 661 cgcctacact gggcttcaag gaagagctgc ggccaccgcc cacaaagctg gctgcctgcg 721 agcccctcaa gcatggactc cagggggcca gcctgggcca cgcagctgca gcccaggccc 781 acctgagctg ccgggacctg ccgctgggcc agccccacta cgattccccc agctgcaagg 841 gcacagccta ttggtaccct ccaggctcag ctgcccgcag cccgccctat gaaggcaagg 901 tgggtacagg gctgctggct gacttcctgg gcaggacgga ggccgcgtgc ctcagtgccc 961 ctcacctggc tagcccacca gccacgccca aggccgacaa ggagccactg gaaatggccc 1021 ggccccctgg cccaccccgt ggccctgctg cagccgctgc tggctatggc tgcccactcc 1081 ttagtgactt gaccctgtcc cccgtgccga gggactcgct gctgcccctg caggacaccg 1141 cctacaggta cccaggcttt atgccccagg cgcatcctgg cctgggtggg ggccccaaga 1201 gcggcttcct ggggcccatg gcggaacctc accccgagga cacattcacc gtcacatctc 1261 tgtacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1321 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1381 tctggatta