Construct: ORF ccsbBroad304_11933

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011511.1_s304c1, BRDN0000406915
Derived from:
ccsbBroadEn_11933
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VILL (50853)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11933
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 50853 VILL villin like NM_001370264.1 99.9% 100% 1872G>T
2 human 50853 VILL villin like NM_001370265.1 95.1% 95.1% 332_333ins99;1773G>T
3 human 50853 VILL villin like NM_015873.3 80.1% 80.1% 1_510del;2382G>T
4 human 50853 VILL villin like NR_163266.1 75.8% (many diffs)
5 human 50853 VILL villin like NR_163267.1 72.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2124
ORF length:
2058
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat gattcagtgg aatgggccca agaccagcat ttctgagaag gctcgggggc
121tggctttgac ctacagcctc cgggacaggg aacgtggtgg tggtcgtgca cagattggtg
181tggtggatga tgaggccaaa gccccggacc tcatgcagat catggaggct gtgctgggcc
241gcagggtggg cagcctgcgt gccgccacgc ccagcaagga tatcaaccag ctgcagaagg
301ccaatgttcg cctgtaccat gtctatgaga agggcaaaga cctggtggtc ctggagttgg
361cgaccccccc actgacccag gacctgctgc aggaggagga cttctacatc ctggaccagg
421gtggcttcaa gatctatgtg tggcagggac gcatgtctag cctccaggag agaaaggctg
481ccttcagccg ggctgtgggc ttcatccagg ccaagggcta cccgacctac accaacgtgg
541aggtggtgaa cgacggcgcc gagtcggccg cgttcaagca gctcttccgg acttggtctg
601agaagcggcg caggaaccag aagctcggcg ggagggataa atcgattcat gtaaagctgg
661acgtgggcaa gctgcacacc cagcctaagt tagcggccca gctcaggatg gtggacgacg
721gctctgggaa ggtggaggtg tggtgcatcc aggacttaca caggcagccc gtggacccca
781agcgtcatgg acagctgtgt gcaggcaact gctaccttgt gctctacaca taccagaggc
841tgggccgtgt ccagtacatc ctgtacctat ggcagggcca ccaggccact gcggatgaga
901ttgaggccct gaacagcaac gctgaggaac tagatgtcat gtatggtggc gtcctagtac
961aggagcatgt gaccatgggc agcgagcccc cccacttcct cgccatcttc cagggccagc
1021tggtgatctt ccaggagaga gctgggcacc atggaaaggg gcagtcagca tccaccacaa
1081ggcttttcca agtgcaaggc actgacagcc acaacaccag gaccatggag gtgccagccc
1141gtgcctcatc cctcaactcc agtgacatct tcttgctggt cacagccagc gtctgctacc
1201tctggtttgg gaagggctgt aatggtgatc agcgtgagat ggcacgggtg gtggtcactg
1261tcatttccag gaagaatgag gaaacggtgc tggagggtca ggagcctccc cacttctggg
1321aggccctggg aggccgggcc ccctacccca gcaacaagag gctccctgag gaggtcccca
1381gcttccagcc acgactgttt gagtgctcca gccacatggg ctgcctggtc ctcgcagaag
1441tggggttctt cagccaggag gacctggaca agtatgacat catgttactg gacacctggc
1501aggagatctt cctgtggctt ggggaagctg caagtgagtg gaaggaggcg gtggcctggg
1561gccaggagta cctgaagact cacccagcag ggaggagccc ggccacaccc atcgtgctgg
1621tcaagcaggg ccatgagcct cccaccttca ttggatggtt cttcacttgg gacccctaca
1681agtggactag ccacccgtcc cacaaggaag tggtggatgg cagcccggca gcagcatcaa
1741ccatctctga gataacagca gaagtcaaca acttgcggct atccagatgg ccgggcaatg
1801gcagggcagg tgccgtggcc ctgcaggccc tcaagggctc ccaggacagc tcagagaatg
1861atctggtgcg aagccccaag tcggctggca gcagaaccag cagctccgtc agcagcacca
1921gcgccacgat caacggtggc ctgcgccggg aacaactgat gcaccaggct gttgaggacc
1981tgccagaggg cgtggaccct gcccgcaggg agttctatct ctcagactct gacttccaag
2041atatctttgg gaaatccaag gaggaattct acagcatggc cacgtggagg cagcggcagg
2101agaaaaagca gctgggcttc ttctgcccaa ctttcttgta caaagtggtt ggtaagccta
2161tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2221gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)