Construct: ORF ccsbBroad304_11969

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013604.1_s304c1, BRDN0000405119
Derived from:
ccsbBroadEn_11969
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TFDP3 (51270)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11969
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51270 TFDP3 transcription factor Dp fam... NM_016521.3 85.1% 85.1% 1_180del
2 human 7027 TFDP1 transcription factor Dp-1 XM_017020720.2 78.1% 68.7% (many diffs)
3 human 7027 TFDP1 transcription factor Dp-1 XM_017020721.1 78.1% 68.7% (many diffs)
4 human 7027 TFDP1 transcription factor Dp-1 XM_024449405.1 77.2% 68.2% (many diffs)
5 human 7027 TFDP1 transcription factor Dp-1 NM_007111.5 72.4% 64.4% (many diffs)
6 human 7027 TFDP1 transcription factor Dp-1 XM_005268327.1 72.4% 64.4% (many diffs)
7 human 7027 TFDP1 transcription factor Dp-1 XM_005268328.2 71.7% 63.9% (many diffs)
8 human 7027 TFDP1 transcription factor Dp-1 XM_017020718.1 71.7% 63.9% (many diffs)
9 human 7027 TFDP1 transcription factor Dp-1 XM_011537519.1 65.7% 57.7% (many diffs)
10 human 7027 TFDP1 transcription factor Dp-1 XM_011537520.2 65.7% 57.7% (many diffs)
11 human 7027 TFDP1 transcription factor Dp-1 XM_024449404.1 65.7% 57.7% (many diffs)
12 human 7027 TFDP1 transcription factor Dp-1 XM_017020717.1 62.5% 55.5% (many diffs)
13 human 7027 TFDP1 transcription factor Dp-1 XM_017020722.2 61% 52.1% (many diffs)
14 human 7027 TFDP1 transcription factor Dp-1 XM_017020719.2 58% 50.4% (many diffs)
15 human 7027 TFDP1 transcription factor Dp-1 NR_026580.1 35.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1104
ORF length:
1035
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcctcagaga ccagcagcat caaacatccc tgtggtagga agcccaaacc
121cacccagcac tcactttgcc tctcagaacc agcattccta ctcctcacct ccttgggccg
181ggcagcacaa caggaaagga gagaagaatg gcatgggcct gtgccgtctt tccatgaagg
241tctgggagac ggtgcagagg aaagggacca cttcctgcca ggaagtggtg ggcgagctgg
301tcgccaagtt cagagctgcc agcaaccacg cctcaccaaa cgagtcagct tatgacgtga
361aaaacataaa acggcgcacc tacgatgcct taaacgtgct gatggccatg aatatcatct
421ccagggagaa aaagaagatc aagtggattg gtctgaccac caactcggct cagaactgtc
481agaacttacg ggtggaaaga cagaagagac ttgaaagaat aaagcagaaa cagtctgaac
541ttcaacaact tattctacag caaattgctt tcaagaacct ggtgctgaga aaccagtatg
601tggaggagca ggtcagccag cggccgctgc ccaactcagt catccacgtg cccttcatca
661tcatcagcag tagcaagaag accgtcatca actgcagcat ctccgacgac aaatcagaat
721atctgtttaa gtttaacagc tcctttgaaa tccacgatga cacagaagtg ctgatgtgga
781tgggcatgac ttttgggcta gagtccggga gctgctctgc cgaagacctt aaaatggcca
841gaaatttggt cccaaaggct ctggagccgt acgtgacaga aatggctcag ggaacttttg
901gaggtgtgtt cacgacggca ggttccaggt ctaatggcac gtggctttct gccagtgacc
961tgaccaacat tgcgattggg atgctggcca caagctccgg tggatctcag tacagtggct
1021ccagggtgga gaccccagca gtcgaggagg aagaggagga ggacaacaac gatgacgacc
1081tcagtgagaa tgacgaggat gacttgccaa ctttcttgta caaagtggtt ggtaagccta
1141tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1201gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)