Construct: ORF ccsbBroad304_11997

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011794.1_s304c1, BRDN0000404232
Derived from:
ccsbBroadEn_11997
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIRT6 (51548)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11997
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51548 SIRT6 sirtuin 6 NM_001321061.2 99.8% 99.6% 448C>T
2 human 51548 SIRT6 sirtuin 6 NM_001321058.2 90.3% 90.1% 314_394del;529C>T
3 human 51548 SIRT6 sirtuin 6 NM_001193285.3 77.9% 77.7% 1_216del;664C>T
4 human 51548 SIRT6 sirtuin 6 XM_024451539.1 77.2% 77% 1_144del;458_538del;673C>T
5 human 51548 SIRT6 sirtuin 6 NM_001321059.2 77% 70.9% (many diffs)
6 human 51548 SIRT6 sirtuin 6 NM_016539.4 72% 71.8% 1_216del;530_610del;745C>T
7 human 51548 SIRT6 sirtuin 6 NM_001321062.2 68% 67.8% 0_1ins189;125_205del;340C>T
8 human 51548 SIRT6 sirtuin 6 NM_001321064.1 58.3% 38.2% (many diffs)
9 human 51548 SIRT6 sirtuin 6 XM_024451540.1 58.3% 38.2% (many diffs)
10 human 51548 SIRT6 sirtuin 6 NM_001321063.2 46.9% 23.6% (many diffs)
11 human 51548 SIRT6 sirtuin 6 NM_001321060.2 46% 30.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
834
ORF length:
768
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggagcgaggt ctggccccca agttcgacac cacctttgag agcgcgcggc
121ccacgcagac ccacatggcg ctggtgcagc tggagcgcgt gggcctcctc cgcttcctgg
181tcagccagaa cgtggacggg ctccatgtgc gctcaggctt ccccagggac aaactggcag
241agctccacgg gaacatgttt gtggaagaat gtgccaagtg taagacgcag tacgtccgag
301acacagtcgt gggcaccatg ggcctgaagg ccacgggccg gctctgcacc gtggctaagg
361caagggggct gcgagcctgc aggaacgccg acctgtccat cacgctgggt acatcgctgc
421agatccggcc cagcgggaac ctgccgctgg ctaccaagcg ccggggaggc cgcctggtca
481tcgtcaacct gcagcccacc aagcacgacc gctatgctga cctccgcatc catggctacg
541ttgacgaggt catgacccgg ctcatgaagc acctggggct ggagatcccc gcctgggacg
601gcccccgtgt gctggagagg gcgctgccac ccctgccccg cccgcccacc cccaagctgg
661agcccaagga ggaatctccc acccggatca acggctctat ccccgccggc cccaagcagg
721agccctgcgc ccagcacaac ggctcagagc ccgccagccc caaacgggag cggcccacca
781gccctgcccc ccacagaccc cccaaaaggg tgaaggccaa ggcggtcccc agctgcccaa
841ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
901cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)