Construct: ORF ccsbBroad304_12088

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012072.1_s304c1, BRDN0000410141
Derived from:
ccsbBroadEn_12088
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GATAD2A (54815)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12088
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54815 GATAD2A GATA zinc finger domain con... XM_024451560.1 90.4% 90.4% 774_929del
2 human 54815 GATAD2A GATA zinc finger domain con... XM_024451558.1 82.4% 82.4% 1_156del;930_1085del
3 human 54815 GATAD2A GATA zinc finger domain con... XM_024451559.1 82.4% 82.4% 1_156del;930_1085del
4 human 54815 GATAD2A GATA zinc finger domain con... NM_017660.4 77.4% 77.4% 1_429del
5 human 54815 GATAD2A GATA zinc finger domain con... NM_001300946.2 77.2% 77.2% 1_429del;1203_1205delAGC
6 human 54815 GATAD2A GATA zinc finger domain con... XM_011528105.2 77.2% 77.2% 1_429del;1203_1205delAGC
7 human 54815 GATAD2A GATA zinc finger domain con... NM_001359631.1 73.3% 73.3% 1_429del;1203_1205delAGC;1500_1501ins75
8 human 54815 GATAD2A GATA zinc finger domain con... XM_017026903.1 71.5% 71.5% 1_429del;1203_1358del
9 human 54815 GATAD2A GATA zinc finger domain con... XM_017026904.1 71.5% 71.5% 1_429del;1203_1358del
10 human 54815 GATAD2A GATA zinc finger domain con... XM_017026905.2 71.5% 71.5% 1_429del;1203_1358del
11 human 54815 GATAD2A GATA zinc finger domain con... XM_017026910.1 71.5% 71.5% 1_429del;1203_1358del
12 human 54815 GATAD2A GATA zinc finger domain con... XM_017026902.1 69.6% 69.6% 1_486del;1260_1415del
13 human 54815 GATAD2A GATA zinc finger domain con... XM_017026907.1 69.6% 69.6% 1_486del;1260_1415del
14 human 54815 GATAD2A GATA zinc finger domain con... XM_017026901.1 67.8% 67.8% 1_429del;1203_1358del;1653_1654ins75
15 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312719.1 65.8% 70.5% (many diffs)
16 mouse 234366 Gatad2a GATA zinc finger domain con... NM_145596.4 65.7% 70.4% (many diffs)
17 mouse 234366 Gatad2a GATA zinc finger domain con... NM_001113346.1 65.5% 70.3% (many diffs)
18 mouse 234366 Gatad2a GATA zinc finger domain con... XM_011242295.2 65.5% 70.3% (many diffs)
19 mouse 234366 Gatad2a GATA zinc finger domain con... XM_006509636.3 65.5% 70.2% (many diffs)
20 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312718.1 65.4% 70.2% (many diffs)
21 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312714.1 65.4% 70.1% (many diffs)
22 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312715.1 65.4% 70.1% (many diffs)
23 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312716.1 65.4% 70.1% (many diffs)
24 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312717.1 65.4% 70.1% (many diffs)
25 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312720.1 62.2% 67.1% (many diffs)
26 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312722.1 62.2% 67% (many diffs)
27 mouse 234366 Gatad2a GATA zinc finger domain con... XM_017312721.1 62.1% 66.9% (many diffs)
28 mouse 234366 Gatad2a GATA zinc finger domain con... XM_006509638.3 62% 66.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1536
ORF length:
1470
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat caagcagctg aaggaagaat tgaggttaga agaagcaaaa ctcgtgttgt
121tgaaaaagtt gcggcagagt caaatacaaa aggaagccac cgcccagaag cccacaggtt
181ctgttgggag caccgtgacc acccctcccc cgcttgttcg gggcactcag aacattcctg
241ctggcaagcc atcactccag acctcttcag ctcggatgcc cggcagtgtc atacccccgc
301ccctggtccg aggtgggcag caggcgtcct cgaagctggg gccacaggcg agctcacagg
361tcgtcatgcc cccactcgtc aggggggctc agcaaatcca cagcattagg caacattcca
421gcacagggcc accgcccctc ctcctggccc cccgggcgtc ggtgcccagt gtgcagattc
481agggacagag gatcatccag cagggcctca tccgcgtcgc caatgttccc aacaccagcc
541tgctcgtcaa catcccacag cccaccccag catcactgaa ggggacaaca gccacctccg
601ctcaggccaa ctccaccccc actagtgtgg cctctgtggt cacctctgcc gagtctccag
661caagccgaca ggcggccgcc aagctggcgc tgcgcaaaca gctggagaag acgctactcg
721agatcccccc acccaagccc ccagccccag agatgaactt cctgcccagc gccgccaaca
781acgagttcat ctacctggtc ggcctggagg aggtggtgca gaacctactg gagacacaag
841gcaggatgtc ggccgccact gtgctgtccc gggagcccta catgtgtgca cagtgcaaga
901cggacttcac gtgccgctgg cgggaggaga agagcggcgc catcatgtgt gagaactgca
961tgacaaccaa ccagaagaag gcgctcaagg tggagcacac cagccggctg aaggccgcct
1021ttgtgaaggc gctgcagcag gaacaggaga ttgagcagcg gctcctgcag cagggcacgg
1081cccctgcaca ggccaaggcc gagcccaccg ctgccccaca ccccgtgctg aagcaggtca
1141taaaaccccg gcgtaagttg gcgttccgct caggagaggc ccgcgactgg agtaacgggg
1201ctgtgctaca ggcctccagc cagctgtccc ggggttcggc cacgacgccc cgaggtgtcc
1261tgcacacgtt cagtccgtca cccaaactgc agaactcagc ctcggccaca gccctggtca
1321gcaggaccgg cagacattct gagagaaccg tgagcgccgg caagggcagc gccacctcca
1381actggaagaa gacgcccctc agcacaggcg ggacccttgc gtttgtcagc ccaagcctgg
1441cggtgcacaa gagctcctcg gccgtggacc gccagcgaga gtacctcctg gacatgatcc
1501caccccgctc catcccccag tcagccacgt ggaaataccc aactttcttg tacaaagtgg
1561ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1621ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)