Construct: ORF ccsbBroad304_12163

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005393.1_s304c1, BRDN0000406612
Derived from:
ccsbBroadEn_12163
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HEATR1 (55127)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12163
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55127 HEATR1 HEAT repeat containing 1 NM_018072.6 16.2% 16.1% (many diffs)
2 mouse 217995 Heatr1 HEAT repeat containing 1 NM_144835.4 13.8% 15.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1113
ORF length:
1047
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ttctgcgtca caggctaata tccgtctcac atctcttaaa aagacactgg
121ctaccacact tgcaccccga gtcctgttgc ccgccatcaa aaaaacttac aagcagattg
181agaagaactg gaagaatcac atgggtccgt ttatgagcat cttgcaagag catattgggg
241cgatgaagaa ggaagagctc acctcccatc agtctcagct aaccgccttt ttcctggagg
301ccctggactt ccgagcccag cactctgaga acgatctgga ggaagttgga aaaacggaaa
361attgtatcat tgactgtcta gtagccatgg ttgtcaaact ttccgaggtc acattcaggc
421ccctgttctt caagctgttt gattgggcta aaacagaaga tgccccaaag gacaggttgt
481tgacatttta caacttggca gattgcattg ctgaaaagct gaaagggctt tttactctgt
541ttgccggcca cttagtgaag ccttttgctg acaccttgga ccaggtgaac atctccaaaa
601cagatgaagc attttttgac tctgaaaatg accctgaaaa gtgctgcttg ctgttgcagt
661ttattttgaa ctgtttatac aaaatcttcc tttttgatac ccagcatttt ataagtaaag
721agagagcagg agccttgatg atgcctctgg tggatcagct ggaaaacagg cttgggggag
781aagagaaatt ccaggaacgg gtgacaaagc acctgatacc atgcatcgca cagttttcag
841tggccatggc ggatgactct ctttggaaac cactgaacta ccagattctg ctaaagacga
901gagactcctc gcctaaggtt cgatttgctg ctttgattac tgtgttagca ctggctgaaa
961aactaaagga gaattatatt gtcttgctac cagaatccat tcctttctta gcagagttga
1021tggaagatga atgtgaagaa gtagaacatc agtgccaaaa gactattcag caactggaaa
1081ctgtcctggg agagccactc cagagctatt tctacccaac tttcttgtac aaagtggttg
1141gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1201accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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