Construct: ORF ccsbBroad304_12188

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016354.1_s304c1, BRDN0000409441
Derived from:
ccsbBroadEn_12188
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBA6 (55236)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12188
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55236 UBA6 ubiquitin like modifier act... XM_017008359.2 37.9% 36.4% (many diffs)
2 human 55236 UBA6 ubiquitin like modifier act... NM_018227.6 36.3% 35% (many diffs)
3 human 55236 UBA6 ubiquitin like modifier act... XR_001741275.2 17.9% (many diffs)
4 mouse 231380 Uba6 ubiquitin-like modifier act... NM_172712.2 31.7% 29.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1233
ORF length:
1167
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggtatgga aggatctgag cctgtggccg cccatcaggg ggaagaggcg tcctgttctt
121cctgggggac tggcagcaca aataaaaatt tgcccattat gtcaacagca tctgtggaaa
181tcgatgatgc attgtatagt cgacagaggt acgttcttgg agacacagca atgcagaaga
241tggccaagtc ccatgttttc ttaagtggga tgggtggtct tggtttggaa attgcaaaga
301atcttgttct tgcagggatt aaggcagtta caattcatga tacagaaaaa tgccaagcat
361gggatctagg aaccaacttc tttctcagtg aagatgatgt tgttaataag agaaacaggg
421ctgaagctgt acttaaacat attgcagaac taaatccata cgttcatgtc acatcatctt
481ctgttccttt caatgagacc acagatctct cctttttaga taaataccag tgtgtagtat
541tgactgagat gaaacttcca ttgcagaaga agatcaatga cttttgccgt tctcagtgcc
601ctccaattaa gtttatcagt gcagatgtac atggaatttg gtcaaggtta ttttgtgatt
661tcggtgatga atttgaagtt ttagatacaa caggagaaga accaaaagaa attttcattt
721caaacataac gcaagcaaat cctggcattg ttacttgcct tgaaaatcat cctcacaaac
781tggagacagg acaattccta acatttcgag aaattaatgg aatgacaggt ttaaatggat
841ctatacaaca aataacggtg atatcgccat tttcttttag tattggtgac accacagaac
901tggaaccata tttacatgga ggcatagctg tccaagttaa gactcctaaa acagtttttt
961ttgaatcact ggagaggcag ttaaaacatc caaagtgcct tattgtggat tttagcaacc
1021ctgaggcacc tttagagatt cacacagcta tgcttgcctt ggaccagttt caggagaaat
1081acagtcgcaa gccaaatgtt ggatgccaac aagattcaga agaactgttg aaactagcaa
1141catctataag tgaaaccttg gaagagaagg tgactattga aatttatggc tgtccgaata
1201tttgtttgtt aatacataag tgttctgtat attacccaac tttcttgtac aaagtggttg
1261gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1321accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)