Construct: ORF ccsbBroad304_12279

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003981.1_s304c1, BRDN0000401386
Derived from:
ccsbBroadEn_12279
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF130 (55819)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12279
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55819 RNF130 ring finger protein 130 NM_018434.6 65.7% 65.8% 1_429del;1134C>T
2 human 55819 RNF130 ring finger protein 130 XM_011534593.3 60.5% 57% (many diffs)
3 human 55819 RNF130 ring finger protein 130 XM_024446129.1 57.8% 55.1% (many diffs)
4 human 55819 RNF130 ring finger protein 130 NM_001280801.2 57.4% 57.2% (many diffs)
5 mouse 59044 Rnf130 ring finger protein 130 NM_021540.4 61.3% 65.1% (many diffs)
6 mouse 59044 Rnf130 ring finger protein 130 NM_001290750.1 54.8% 56.1% (many diffs)
7 mouse 59044 Rnf130 ring finger protein 130 NM_001290749.1 53% 56.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
897
ORF length:
828
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gactcatcca ggcactggag atattattgc tgtcatgata acagaattga
121ggggtaagga tattttgagt tatctggaga aaaacatctc tgtacaaatg acaatagctg
181ttggaactcg aatgccaccg aagaacttca gccgtggctc tctagtcttc gtgtcaatat
241cctttattgt tttgatgatt atttcttcag catggctcat attctacttc attcagaaga
301tcaggtacac aaatgcacgc gacaggaacc agcgtcgtct cggagatgca gccaagaaag
361ccatcagtaa attgacaacc aggacagtaa agaagggtga caaggaaact gacccagact
421ttgatcattg tgcagtctgc atagagagct ataagcagaa tgatgtcgtc cgaattctcc
481cctgcaagca tgttttccac aaatcctgcg tggatccctg gcttagtgaa cattgtacct
541gtcctatgtg caaacttaat atattgaagg ccctgggaat tgtgccgaat ttgccatgta
601ctgataacgt agcattcgat atggaaaggc tcaccagaac ccaagctgtt aaccgaagat
661cagccctcgg cgacctcgcc ggcgacaact cccttggcct tgagccactt cgaacttcgg
721ggatctcacc tcttcctcag gatggggagc tcactccgag aacaggagaa attaacattg
781cagtaacaaa agaatggttt attattgcca gttttggcct cctcagtgcc ctcacactct
841gctacatgat catcagagcc acagctagct tgaatgctaa tgaggtagaa tggtttttgc
901caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
961ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1021tta

Download FASTA (ORF) (Full)