Construct: ORF ccsbBroad304_12315

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005094.1_s304c1, BRDN0000408650
Derived from:
ccsbBroadEn_12315
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARNTL2 (56938)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12315
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248003.2 100% 100%
2 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248004.2 98.1% 98.1% 29_30ins33
3 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520769.2 97.7% 97.7% 216_257del
4 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_024449072.1 97% 96.1% (many diffs)
5 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019666.1 94.8% 94.8% 451_452ins93
6 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_006719112.3 94.6% 94.6% 216_317del
7 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248002.2 92.8% 92.8% 29_30ins33;183_284del
8 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520766.2 92.5% 92.5% 216_359del
9 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_020183.5 90.8% 90.8% 29_30ins33;183_326del
10 human 56938 ARNTL2 aryl hydrocarbon receptor n... NM_001248005.2 90.1% 86.4% 1554_1555ins109;1620_1621ins68
11 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_024449071.1 89.9% 89% (many diffs)
12 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520770.2 88.9% 88.3% (many diffs)
13 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520771.2 88.9% 88.3% (many diffs)
14 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019667.1 88.9% 88.3% (many diffs)
15 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019668.1 88.9% 88.3% (many diffs)
16 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_017019669.1 88.5% 87.9% (many diffs)
17 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_011520768.2 87.7% 87.7% 216_359del;595_596ins93
18 human 56938 ARNTL2 aryl hydrocarbon receptor n... XM_006719114.3 85.8% 85.8% 0_1ins255
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1866
ORF length:
1797
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggcggaa gaggaggctg cggcgggagg tgaggttgcc ggtggcgagg
121cgacggcccc aggtaaagtg ttgagagagg agaaccagtg cattgctcct gtggtttcca
181gccgcgtgag tccagggaca agaccaacag ctatggggtc tttcagctca cacatgacag
241agtttccacg aaaacgcaaa ggaagtgatt cagacccatc ccaagaagct catagccaaa
301ctgaaaagcg gaggagagat aaaatgaata acctgattga agaactgtct gcaatgatcc
361ctcagtgcaa ccccatggcg cgtaaactgg acaaacttac agttttaaga atggctgttc
421aacacttgag atctttaaaa ggcttgacaa attcttatgt gggaagtaat tatagaccat
481catttcttca ggataatgag ctcagacatt taatccttaa gactgcagaa ggcttcttat
541ttgtggttgg atgtgaaaga ggaaaaattc tcttcgtttc taagtcagtc tccaaaatac
601ttaattatga tcaggctagt ttgactggac aaagcttatt tgacttctta catccaaaag
661atgttgccaa agtaaaggaa caactttctt cttttgatat ttcaccaaga gaaaagctaa
721tagatgccaa aactggtttg caagttcaca gtaatctcca cgctggaagg acacgtgtgt
781attctggctc aagacgatct tttttctgtc ggataaagag ttgtaaaatc tctgtcaaag
841aagagcatgg atgcttaccc aactcaaaga agaaagagca cagaaaattc tatactatcc
901attgcactgg ttacttgaga agctggcctc caaatattgt tggaatggaa gaagaaagga
961acagtaagaa agacaacagt aattttacct gccttgtggc cattggaaga ttacagccat
1021atattgttcc acagaacagt ggagagatta atgtgaaacc aactgaattt ataacccggt
1081ttgcagtgaa tggaaaattt gtctatgtag atcaaagggc aacagcgatt ttaggatatc
1141tgcctcagga acttttggga acttcttgtt atgaatattt tcatcaagat gaccacaata
1201atttgactga caagcacaaa gcagttctac agagtaagga gaaaatactt acagattcct
1261acaaattcag agcaaaagat ggctcttttg taactttaaa aagccaatgg tttagtttca
1321caaatccttg gacaaaagaa ctggaatata ttgtatctgt caacacttta gttttgggac
1381atagtgagcc tggagaagca tcatttttac cttgtagctc tcaatcatca gaagaatcct
1441ctagacagtc ctgtatgagt gtacctggaa tgtctactgg aacagtactt ggtgctggta
1501gtattggaac agatattgca aatgaaattc tggatttaca gaggttacag tcttcttcat
1561accttgatga ttcgagtcca acaggtttaa tgaaagatac tcatactgta aactgcagga
1621gtatgtcaaa taaggagttg tttccaccaa gtccttctga aatgggggag ctagaggcta
1681ccaggcaaaa ccagagtact gttgctgtcc acagccatga gccactcctc agtgatggtg
1741cacagttgga tttcgatgcc ctatgtgaca atgatgacac agccatggct gcatttatga
1801attacttaga agcagagggg ggcctgggag accctgggga cttcagtgac atccagtgga
1861ccctcttgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1921gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1981acctctggat ta

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