Construct: ORF ccsbBroad304_12424

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000089.1_s304c1, BRDN0000411266
Derived from:
ccsbBroadEn_12424
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH26 (60437)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12424
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60437 CDH26 cadherin 26 NM_001348204.2 100% 100%
2 human 60437 CDH26 cadherin 26 NM_021810.6 75.1% 75.1% 97_219del
3 human 60437 CDH26 cadherin 26 XM_017028001.1 15.4% 14.8% (many diffs)
4 human 60437 CDH26 cadherin 26 XM_017027999.1 15% 14.4% (many diffs)
5 human 60437 CDH26 cadherin 26 NM_177980.4 14.7% 14.1% (many diffs)
6 human 60437 CDH26 cadherin 26 XM_017027998.1 14.6% 14% (many diffs)
7 human 60437 CDH26 cadherin 26 NR_145482.2 7.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
438
ORF length:
372
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa acctctgata tggacatggt cagatgttga aggccagagg ccggctctgc
121tcatctgcac agctgcagca ggacccacgc agggagttaa ggcttaccca gatgccacaa
181tgcacagaca actcctggct ccggtggaag gaaggatggc agagacattg aatcagaaac
241tccatgttgc caatgtgctg gaagatgacc ccggctacct acctcacgtc tacagcgagg
301aaggggagtg tggaggggcc ccatccctca gctctctggc cagcttggaa caggagttgc
361aacctgattt gctggactct ttgggttcaa aagcgactcc gtttgaggaa atatattcag
421agtcaggtgt tccttcctac ccaactttct tgtacaaagt ggttggtaag cctatcccta
481accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
541agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)