Construct: ORF ccsbBroad304_12561

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000224.1_s304c1, BRDN0000399955
Derived from:
ccsbBroadEn_12561
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZXDC (79364)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12561
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79364 ZXDC ZXD family zinc finger C XM_011513119.2 48.3% 47.4% (many diffs)
2 human 79364 ZXDC ZXD family zinc finger C NM_025112.5 45.5% 45.5% 1_1401del
3 human 79364 ZXDC ZXD family zinc finger C XM_006713741.2 35.1% 35.1% 1_1401del;2126_2127ins267
4 human 79364 ZXDC ZXD family zinc finger C NR_104249.2 32.3% (many diffs)
5 human 79364 ZXDC ZXD family zinc finger C XM_005247757.3 31.5% 31.5% 1_1401del;2214_2215ins360
6 human 79364 ZXDC ZXD family zinc finger C XR_924169.2 29.6% 1_1466del;2191_2192ins85;2555_3584del
7 human 79364 ZXDC ZXD family zinc finger C NM_001040653.3 28.2% 28.2% 1_1401del;2129T>A;2130_2131ins444
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1239
ORF length:
1173
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa ggcgcacatg gtcagacagc acagccggcg ccaagatctc ttacctcagc
121tagaagctcc gagttctctt actcccagca gtgaactcag cagcccaggc caaagtgagc
181tcactaacat ggatcttgct gcactcttct ctgacacacc tgccaatgct agtggttctg
241caggtgggtc ggatgaggct ctgaactccg gaatcctgac tattgacgtc acttctgtga
301gctcctctct gggagggaac ctccctgcta ataatagctc cctagggccg atggaacccc
361tggtcctggt ggcccacagt gatattcccc caagcctgga cagccctctg gttctcggga
421cagcagccac ggttctgcag cagggcagct tcagtgtgga tgacgtgcag actgtgagtg
481caggagcatt aggctgtctg gtggctctgc ccatgaagaa cttgagtgac gacccactgg
541ctttgacctc caatagtaac ttagcagcac atatcaccac accgacctct tcgagcaccc
601cccgagaaaa tgccagtgtc ccggaactgc tggctccaat caaggtggag ccggactcgc
661cttctcgccc aggagcagtt gggcagcagg aaggaagcca tgggctgccc cagtccacgt
721tgcccagtcc agcagagcag cacggtgccc aggacacaga gctcagtgca ggcactggca
781acttctattt ggaaagtggg ggctcagcaa gaactgatta ccgagccatt caactagcca
841aggaaaaaaa gcagagagga gcggggagca atgcaggagc ctcacagtct actcagagaa
901aaataaaaga aggcaaaatg agtcctcccc atttccatgc aagccagaac agttggttgt
961gtgggagcct cgtggtgccc agcggaggac ggccaggacc agctccagca gctggggtgc
1021agtgcggggc gcagggcgtc caggtccagc tggtgcagga tgacccctcc ggcgaaggtg
1081tcctgccctc ggcccgcggc ccagccacct tcctcccctt cctcactgtg gacctgcccg
1141tctacgtcct ccaggaggtg ctcccctcat ctggaggccc tgctggaccg gaggccaccc
1201agttcccagg aagcactatc aacctgcagg atctgcagtg cccanctttc ttgtacaaag
1261tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1321gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

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