Construct: ORF ccsbBroad304_12627
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008081.1_s304c1, BRDN0000399192
- Derived from:
- ccsbBroadEn_12627
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMYM1 (79830)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12627
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_001289088.1 | 78.9% | 78.7% | 2696_2697insT;2706_3426del |
| 2 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_001289090.1 | 78.9% | 78.7% | 2696_2697insT;2706_3426del |
| 3 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_024772.5 | 78.9% | 78.7% | 2696_2697insT;2706_3426del |
| 4 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_001289089.1 | 77.2% | 77% | 959_960ins57;2639_2640insT;2649_3369del |
| 5 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449823.1 | 76.9% | 76.7% | 1_90del;2786_2787insT;2796_3516del |
| 6 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449822.1 | 75.5% | 75.3% | 1_153del;2849_2850insT;2859_3579del |
| 7 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_011542163.3 | 74.5% | 74.3% | (many diffs) |
| 8 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_001319955.1 | 72.3% | 72.1% | 0_1ins225;2471_2472insT;2481_3201del |
| 9 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_017002358.1 | 72.3% | 72.1% | 0_1ins225;2471_2472insT;2481_3201del |
| 10 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_017002359.1 | 71.3% | 71.1% | (many diffs) |
| 11 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_011542165.3 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 12 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_017002360.2 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 13 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449824.1 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 14 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449825.1 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 15 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449827.1 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 16 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449828.1 | 62.2% | 61.9% | 0_1ins573;2123_2124insT;2133_2853del |
| 17 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_011542166.3 | 50.4% | 47% | 1_153del;1502_1503ins115;1596_1597ins1148 |
| 18 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | NM_001289091.1 | 47.4% | 47.1% | 0_1ins1080;1616_1617insT;1626_2346del |
| 19 | human | 79830 | ZMYM1 | zinc finger MYM-type contai... | XM_024449833.1 | 47.4% | 47.1% | 0_1ins1080;1616_1617insT;1626_2346del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2772
- ORF length:
- 2706
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa agaaccactt ttaggtggtg agtgtgacaa ggcagtggca tcacagctgg 121 ggctgctaga tgaaattaag acagaacccg acaatgctca agagtattgt cataggcaac 181 agtccagaac tcaggagaat gaactgaaaa taaatgctgt gttttcagag agtgcttcac 241 agttgactgc aggcattcag ctttctctgg catcatctgg cgtgaataaa atgcttcctt 301 cagtttcaac cacagctatt caggtttcct gtgctggttg taaaaaaatt ctccagaagg 361 ggcaaactgc ttatcagagg aaaggatctg ctcaactttt ctgctccata ccatgcatca 421 ctgaatacat ttcatctgcc agttcaccag ttccttctaa gagaacttgt tcaaactgct 481 caaaagacat tttaaatcca aaggatgtga ttagtgtcca gctggaagac actacctctt 541 gcaaaacttt ttgcagccta tcttgtcttt catcatatga agaaaaaaga aaaccatttg 601 ttaccatatg tactaatagc attttgacca agtgcagcat gtgccagaag actgctatta 661 ttcagtatga agtaaaatac caaaatgtga aacataatct ttgcagtaat gcctgccttt 721 caaagtttca ctctgctaac aacttcatca tgaactgctg tgagaactgt ggcacttact 781 gttacaccag ctctagtctg tcccacatac ttcagatgga aggacagtct cattacttta 841 atagttcaaa gagtattaca gcatataagc agaaacctgc caaaccactt atatctgttc 901 cttgcaaacc attgaagccc tcagatgaaa tgattgagac tacgagtgat ttggggaaga 961 cagagctttt ctgctctatt aattgtttct ctgcatacag taaagctaag atggaatctt 1021 cttcagtaag tgttgtttct gtggtgcatg atacttcaac agagcttctt tctccaaaga 1081 aagatacgac tccagttata agcaatatag tgtcattggc agacaccgat gttgccttgc 1141 ccatcatgaa cactgatgtc ttacaagata cagtttcttc agtaacagca acagcagatg 1201 tcattgtgga tctttctaag agttcaccta gtgaacccag taatgctgtt gctagtagta 1261 gtacggaaca gccaagcgtt tcaccatctt catcagtatt cagtcagcat gcaattggtt 1321 ccagtacaga agtacaaaaa gacaatatga aatctatgaa aataagtgat gaactatgtc 1381 acccaaaatg tacatccaaa gtacaaaaag ttaaaggtaa atcacgaagt attaaaaaat 1441 cttgttgtgc agattttgag tgtttggaaa acagtaaaaa agatgtggca ttctgttatt 1501 catgccagtt gttctgccaa aaatatttta gctgtggaag agagtcattt gcaacccacg 1561 gaacttctaa ttggaaaaaa accctggaaa aattcagaaa gcatgaaaaa agtgaaatgc 1621 atttgaagtc attggaattt tggagagaat accaattttg tgatggagct gtcagtgacg 1681 atttatctat tcattcgaaa cagattgagg gaaataaaaa gtacctaaag cttataattg 1741 aaaatatttt atttcttgga aagcagtgtt tacccttaag aggaaacgac cagtcagttt 1801 catctgtgaa taaaggcaat tttttagaat tgttagaaat gagagcaaaa gataaaggag 1861 aagaaacatt tcgacttatg aattcacaag ttgacttcta taacagtaca caaattcaaa 1921 gtgatattat cgaaataata aagactgaaa tgttgcagga tattgtgaat gagatcaatg 1981 actcctcagc attttcaatc atatgtgatg agacaatcaa tagtgccatg aaagaacagc 2041 tttcaatttg tgtaagatac ccacaaaaat catcaaaggc tatcttaatt aaggaaagat 2101 tcttgggttt tgttgatact gaggagatga ctgggaccca cttacatagg actatcaaaa 2161 cttatctgca gcaaattgga gttgatatgg ataaaataca tggccaggcc tatgatagca 2221 ccactaattt gaagataaaa tttaataaaa tagcagcaga attcaagaaa gaagaaccaa 2281 gagctttata catacattgt tatgcacact ttttggattt atcaataatt aggttttgta 2341 aagaagtaaa agaactccga agtgctctaa aaactctcag ttctttgttc aacactattt 2401 gtatgtctgg ggaaatgttg gcaaattttc gaaacattta taggctaagt caaaacaaaa 2461 catgcaagaa acatatatca caatcatgtt ggacagtcca tgatcgtaca ttactatctg 2521 tgattgacag tcttccagag attattgaaa cattggaagt tatagcaagc cattcttcaa 2581 atacaagttt cgccgatgaa ttgagtcatt tgctgacatt ggtttccaaa tttgaatttg 2641 tcttttgttt gaaattcctg tatcgagtgc tgagtgttac aggaattctt tccaaagagc 2701 ttcaaaataa aaccatagac attttttctt tgtcttcaaa aatagaagca attttggaat 2761 gttttatcat cngcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 2821 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 2881 caatcaacct ctggatta