Construct: ORF ccsbBroad304_12645

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013617.1_s304c1, BRDN0000406923
Derived from:
ccsbBroadEn_12645
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIAA0319L (79932)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12645
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79932 KIAA0319L KIAA0319 like XM_006710910.1 100% 100%
2 human 79932 KIAA0319L KIAA0319 like XM_017002374.1 99.2% 99.1% 840_854del
3 human 79932 KIAA0319L KIAA0319 like XM_017002377.1 85.6% 80% 1704_1705ins91;1776_1777ins206
4 human 79932 KIAA0319L KIAA0319 like XM_017002378.1 69.8% 69.6% 0_1ins615;225_239del
5 human 79932 KIAA0319L KIAA0319 like NM_024874.5 65.8% 65.8% 1_1074del
6 human 79932 KIAA0319L KIAA0319 like XM_006710907.1 65.8% 65.8% 1_1074del
7 human 79932 KIAA0319L KIAA0319 like XM_006710909.2 65.8% 65.8% 1_1074del
8 human 79932 KIAA0319L KIAA0319 like XM_011542179.2 65.8% 65.8% 1_1074del
9 human 79932 KIAA0319L KIAA0319 like XM_017002366.1 65.5% 65.4% 1_1074del;1914_1928del
10 human 79932 KIAA0319L KIAA0319 like XM_017002367.1 65.5% 65.4% 1_1074del;1914_1928del
11 human 79932 KIAA0319L KIAA0319 like XM_017002368.1 65.5% 65.4% 1_1074del;1914_1928del
12 human 79932 KIAA0319L KIAA0319 like XM_017002369.2 65.5% 65.4% 1_1074del;1914_1928del
13 human 79932 KIAA0319L KIAA0319 like XM_011542180.1 56.4% 53.2% 1_1074del;2778_2779ins91;2850_2851ins206
14 human 79932 KIAA0319L KIAA0319 like XM_017002372.2 56.4% 53.2% 1_1074del;2778_2779ins91;2850_2851ins206
15 human 79932 KIAA0319L KIAA0319 like XM_017002370.1 56.1% 52.9% (many diffs)
16 human 79932 KIAA0319L KIAA0319 like XM_017002371.1 56.1% 52.9% (many diffs)
17 human 79932 KIAA0319L KIAA0319 like XR_001737421.1 46.9% (many diffs)
18 human 79932 KIAA0319L KIAA0319 like XM_017002373.2 46.1% 45.8% (many diffs)
19 human 79932 KIAA0319L KIAA0319 like XR_001737425.1 42.4% (many diffs)
20 human 79932 KIAA0319L KIAA0319 like XR_001737426.1 41.4% 1_1131del;2409_2410ins160;3045_4451del
21 human 79932 KIAA0319L KIAA0319 like XR_946763.2 40.8% 1_1301del;3187_3479del;3668_5074del
22 human 79932 KIAA0319L KIAA0319 like XR_001737420.1 40.7% (many diffs)
23 human 79932 KIAA0319L KIAA0319 like XR_001737423.1 40.3% 1_1301del;2740_2741ins143;3232_4638del
24 human 79932 KIAA0319L KIAA0319 like XR_002957627.1 40.2% (many diffs)
25 human 79932 KIAA0319L KIAA0319 like XR_246296.1 40% 1_1301del;2579_2580ins160;3215_4621del
26 human 79932 KIAA0319L KIAA0319 like XR_001737424.1 39.8% (many diffs)
27 mouse 100317 AU040320 expressed sequence AU040320 XM_017319898.1 59.7% 62.9% (many diffs)
28 mouse 100317 AU040320 expressed sequence AU040320 XM_017319899.1 59.7% 62.9% (many diffs)
29 mouse 100317 AU040320 expressed sequence AU040320 NM_133886.2 58.5% 61.7% (many diffs)
30 mouse 100317 AU040320 expressed sequence AU040320 XM_017319894.1 58.5% 61.7% (many diffs)
31 mouse 100317 AU040320 expressed sequence AU040320 XM_017319895.1 58.5% 61.7% (many diffs)
32 mouse 100317 AU040320 expressed sequence AU040320 XM_017319896.1 58.5% 61.7% (many diffs)
33 mouse 100317 AU040320 expressed sequence AU040320 XM_017319897.1 58.5% 61.7% (many diffs)
34 mouse 100317 AU040320 expressed sequence AU040320 NM_001035525.1 56% 57.1% (many diffs)
35 mouse 100317 AU040320 expressed sequence AU040320 NM_001035526.1 56% 57.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2139
ORF length:
2073
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agggaaacat tcccagatcc tcaaactatc gaagctcact ccaggcctgt
121atgaattcaa agtgattgta gagggtcaaa atgcccatgg ggaaggctat gtgaacgtga
181cagtcaagcc agagccccgt aagaatcggc cccccattgc tattgtgtca cctcagttcc
241aggagatctc tttgccaacc acttctacag tcattgatgg cagtcaaagc actgatgatg
301ataaaatcgt tcagtaccat tgggaagaac ttaaggggcc tctaagagaa gagaagattt
361ctgaagatac agccatatta aaactaagta aactcgtccc tgggaactac actttcagct
421tgactgtagt agactctgat ggagctacca actctactac tgcaaacctg acagtgaaca
481aagctgtgga ttacccccct gtggccaacg caggccccaa ccaagtgatc accctgcccc
541aaaactccat caccctcttt gggaaccaga gcactgatga tcatggcatc accagctatg
601agtggtcact cagcccaagc agcaaaggga aagtggtgga gatgcagggt gttagaacac
661caaccttaca gctctctgcg atgcaagaag gagactacac ttaccagctc acagtgactg
721acacaatagg acagcaggcc actgctcaag tgactgttat tgtgcaacct gaaaacaata
781agcctcctca ggcagatgca ggcccagata aagagctgac ccttcctgtg gatagcacaa
841ccctggatgg cagcaagagc tcagatgatc agaaaattat ctcatatctc tgggaaaaaa
901cacagggacc tgatggggtg cagctcgaga atgctaacag cagtgttgct actgtgactg
961ggctgcaagt ggggacctat gtgttcacct tgactgtcaa agatgagagg aacctgcaaa
1021gccagagctc tgtgaatgtc attgtcaaag aagaaataaa caaaccacct atagccaaga
1081taactgggaa tgtggtgatt accctaccca cgagcacagc agagctggat ggctctaagt
1141cctcagatga caagggaata gtcagctacc tctggactcg agatgagggg agcccagcag
1201caggggaggt gttaaatcac tctgaccatc accctatcct ttttctttca aacctggttg
1261agggaaccta cacttttcac ctgaaagtga ccgatgcaaa gggtgagagt gacacagacc
1321ggaccactgt ggaggtgaaa cctgatccca ggaaaaacaa cctggtggag atcatcttgg
1381atatcaacgt cagtcagcta actgagaggc tgaaggggat gttcatccgc cagattgggg
1441tcctcctggg ggtgctggat tccgacatca ttgtgcaaaa gattcagccg tacacggagc
1501agagcaccaa aatggtattt tttgttcaaa acgagcctcc ccaccagatc ttcaaaggcc
1561atgaggtggc agcgatgctc aagagtgagc tgcggaagca aaaggcagac tttttgatat
1621tcagagcctt ggaagtcaac actgtcacat gtcagctgaa ctgttccgac catggccact
1681gtgactcgtt caccaaacgc tgtatctgtg accctttttg gatggagaat ttcatcaagg
1741tgcagctgag ggatggagac agcaactgtg agtggagcgt gttatatgtt atcattgcta
1801cctttgtcat tgttgttgcc ttgggaatcc tgtcttggac tgtgatctgt tgttgtaaga
1861ggcaaaaagg aaaacccaag aggaaaagca agtacaagat cctggatgcc acggatcagg
1921aaagcctgga gctgaagcca acctcccgag caggcatcaa acagaaaggc cttttgctaa
1981gtagcagcct gatgcactcc gagtcagagc tggacagcga tgatgccatc tttacatggc
2041cagaccgaga gaagggcaaa ctcctgcatg gtcagaatgg ctctgtaccc aacgggcaga
2101cccctctgaa ggccaggagc ccgcgggagg agatcctgta cccaactttc ttgtacaaag
2161tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2221gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)