Construct: ORF ccsbBroad304_12668
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017440.1_s304c1, BRDN0000461665
- Derived from:
- ccsbBroadEn_12668
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATF7IP2 (80063)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12668
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80063 | ATF7IP2 | activating transcription fa... | NM_001352120.2 | 99.8% | 99.8% | 180_182delGAC;1767C>A |
| 2 | human | 80063 | ATF7IP2 | activating transcription fa... | NM_024997.5 | 99.8% | 99.8% | 180_182delGAC;1767C>A |
| 3 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_006720953.3 | 99.8% | 99.8% | 180_182delGAC;1767C>A |
| 4 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023705.2 | 99.8% | 99.8% | 180_182delGAC;1767C>A |
| 5 | human | 80063 | ATF7IP2 | activating transcription fa... | NM_001256160.3 | 79.4% | 72.3% | 180_182delGAC;1481_1482ins67;1629_1630ins350 |
| 6 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023706.2 | 79.4% | 72.3% | 180_182delGAC;1481_1482ins67;1629_1630ins350 |
| 7 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023707.2 | 67.3% | 65.8% | 180_182delGAC;1350_1351ins74;1380_1381ins592 |
| 8 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023708.1 | 58.2% | 58.2% | 0_1ins852;912C>A |
| 9 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_006720954.4 | 53.4% | 53.3% | 180_182delGAC;1096_1097delAGinsGC;1098_1099ins948 |
| 10 | human | 80063 | ATF7IP2 | activating transcription fa... | XR_001751991.1 | 53.2% | (many diffs) | |
| 11 | human | 80063 | ATF7IP2 | activating transcription fa... | NR_045815.3 | 51.4% | (many diffs) | |
| 12 | human | 80063 | ATF7IP2 | activating transcription fa... | NR_147927.2 | 50.8% | (many diffs) | |
| 13 | human | 80063 | ATF7IP2 | activating transcription fa... | NR_045816.3 | 49.4% | (many diffs) | |
| 14 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023710.1 | 42.9% | 43% | 0_1ins1164;600C>A |
| 15 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_011522666.2 | 42.7% | 41.9% | (many diffs) |
| 16 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023709.1 | 42.7% | 41.9% | (many diffs) |
| 17 | human | 80063 | ATF7IP2 | activating transcription fa... | XR_001751990.1 | 42.4% | (many diffs) | |
| 18 | human | 80063 | ATF7IP2 | activating transcription fa... | XR_001751992.2 | 39% | (many diffs) | |
| 19 | human | 80063 | ATF7IP2 | activating transcription fa... | XM_017023711.1 | 34.3% | 34.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2112
- ORF length:
- 2043
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcaagtcca gatagaagta aacggaagat attaaaagcc aaaaagacaa 121 tgcccctaag ttgccggaag caagtagaga tgctgaataa gtcaaggaat gttgaagcgc 181 tgaaaacagc aattgggagt aatgttccaa gcggtaatca gagtttcagt cctagtgtca 241 taactaggac tgaaataacc aaatgtagcc cttctgaaaa tggtgcatcc tcattggact 301 ctaataaaaa ttcaatatca gagaaaagta aagtattctc tcagaattgc ataaaaccag 361 tagaagaaat tgttcattca gaaacaaaat tggaacaagt tgtttgttcg taccaaaagc 421 caagtagaac aacagaatcc cccagcagag tcttcacaga agaggcaaaa gattcactga 481 acacttctga aaacgattct gagcatcaga caaatgtaac aagatccctt tttgagcatg 541 agggggcttg tagtctaaag tccagttgct gtccacccag tgtattgagt ggtgttgttc 601 agatgccaga gtctacagta accagtaccg tgggtgacaa gaaaactgac cagatggttt 661 tccatttaga aacaaactcc aattcagaat cacatgataa aaggcaaagt gacaacattt 721 tatgttcaga agactcaggt tttgtgcctg ttgagaaaac acctaatttg gtgaattcag 781 tcacttctaa caactgtgct gatgacattt tgaaaactga tgagtgtagt agaaccagta 841 tttcaaattg tgaaagtgca gactcaacat ggcagtcatc acttgacact aataacaaca 901 gccattatca aaagaagagg atgttttcag aaaacgagga aaatgttaaa cgcatgaaaa 961 cttcagagca aattaatgaa aatatttgtg taagtttgga aaggcaaaca gcattcctgg 1021 aacaggtcag acatttgatt cagcaggaga tctatagcat aaattatgaa ctatttgata 1081 agaaactgaa agaattgaac caacgcattg ggaagacaga gtgcagaaat aagcatgaag 1141 gaatagctga taaacttttg gcaaaaatag caaaacttca aagacgtatt aaaacagtat 1201 tattatttca aaggaattgt ttgaaaccaa acatgttatc cagtaatgga gcctctaagg 1261 ttgcaaattc agaggctatg attttggata agaatcttga gtcagttaat agtccaattg 1321 aaaagtcttc tgtgaattat gagccttcta acccttccga aaaaggaagt aaaaaaatta 1381 atttgtcatc agatcaaaat aagtctgttt ctgaaagtaa caatgatgat gttatgttga 1441 tttctgtgga aagtcctaat ttgacaactc caattacatc aaatccaaca gataccagaa 1501 aaattacatc aggaaattct agcaattctc ccaatgctga agttatggct gtacagaaga 1561 aacttgattc tataattgat ttgacaaaag aaggcctatc caactgcaat acagaaagtc 1621 cagtatcccc cctggagtca cattcgaaag ctgcttcaaa ctcaaaggaa acaaccccat 1681 tggcacaaaa tgcagtccag gttcctgagt cctttgagca cctgccacct ctcccagaac 1741 caccagcacc actacctgaa ttagtagaca aaacccgaga cacacttcct ccccagaagc 1801 ctgagctcaa agtgaaacgg gttttcagac caaatggcat tgccctgact tggaatataa 1861 ccaaaatcaa tcccaagtgt gctcctgtag aaagctacca cctcttcctg tgtcatgaga 1921 actctaataa taagttgatt tggaagaaga ttggagaaat taaagcttta ccactcccca 1981 tggcctgtac tttatctcag tttttagctt ccaacagata ctattttact gtccaatcaa 2041 aagatatttt tggacgatat ggaccattct gtgatataaa atctatccct gggttttctg 2101 aaaatcttac gttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 2161 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 2221 caatcaacct ctggatta