Construct: ORF ccsbBroad304_12739

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009391.1_s304c1, BRDN0000404671
Derived from:
ccsbBroadEn_12739
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC25 (83538)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12739
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83538 TTC25 tetratricopeptide repeat do... NM_031421.5 98.8% 98.5% 651C>T;1980_1981insA;1995_2016del
2 human 83538 TTC25 tetratricopeptide repeat do... NM_001350319.2 72.1% 67.6% 651C>T;1342_1343ins101;1440_1441ins454
3 human 83538 TTC25 tetratricopeptide repeat do... NR_146622.2 60% (many diffs)
4 human 83538 TTC25 tetratricopeptide repeat do... NR_110662.3 49.6% (many diffs)
5 human 83538 TTC25 tetratricopeptide repeat do... NR_146621.2 46.3% (many diffs)
6 mouse 74407 Ttc25 tetratricopeptide repeat do... XM_011249287.2 66.2% 67.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2061
ORF length:
1995
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc ggaccccgaa ggcgagacct tgcgaagcac ctttccctct tatatggccg
121aaggcgagcg gctctacctg tgcggggaat tttctaaagc cgcgcagagc ttcagcaacg
181ctctttacct tcaggatgga gacaagaact gcctggttgc tcgctcaaag tgcttcctga
241agatgggaga cttggagaga tccctgaagg atgctgaggc ttcgctccag agtgacccag
301ctttctgtaa ggggattttg caaaaggctg agacactgta caccatggga gactttgagt
361ttgccttggt attctatcat cgaggctaca agctgaggcc tgatcgggaa ttcagagttg
421gcattcagaa agcccaggaa gccatcaaca actcagtggg aagtccttct tccattaagc
481tggagaacaa aggggacctc tccttcttaa gcaagcaggc tgagaatata aaagcccagc
541agaagcctca gcccatgaaa cacctcttac accccaccaa gggagagccc aagtggaagg
601cctcgctcaa gagtgagaag actgtccgcc agcttctggg ggagctctac gtggacaaag
661agtatttgga gaagctccta ttggatgaag acctgatcaa aggcaccatg aagggtggcc
721tgactgtgga ggacctcatc atgacgggca tcaactacct ggatactcac agcaacttct
781ggaggcagca gaagccgatc tacgccaggg agcgggaccg gaagctgatg caagagaaat
841ggctgcggga ccacaaacgc cgtccctcac agacagccca ttacatcctc aagagcctgg
901aggacattga tatgttgctc acaagtggca gtgctgaagg gagtcttcag aaagctgaga
961aagtgctgaa gaaggtactg gaatggaaca aggaagaggt acccaacaag gatgaactgg
1021ttggaaactt gtatagctgc atagggaatg cccagattga gctggggcag atggaggcag
1081ccctgcagag ccacagaaag gacctggaga tcgccaagga atatgacctt cctgatgcaa
1141aatcgagagc ccttgacaac attggcagag tttttgccag agttgggaaa ttccagcaag
1201ccattgacac gtgggaagaa aagatccctc tggcaaaaac caccctggag aagacctggc
1261tgttccacga gatcggccgc tgctacttgg agctggacca ggcctggcag gcccagaatt
1321atggcgagaa gtcccagcag tgtgccgagg aggaagggga cattgagtgg caactgaatg
1381ccagtgttct ggtggcccag gcacaagtga agctgagaga cttcgagtca gccgtgaaca
1441attttgagaa ggccctggag agagcaaagc ttgtgcataa caacgaggcg cagcaggcca
1501tcatcagtgc cttggacgat gccaacaagg gtatcatcag agaactgagg aaaaccaact
1561acgtggagaa tctcaaagaa aaaagcgagg gagaagcttc actgtatgaa gatagaataa
1621taacaagaga gaaggacatg aggagagtga gagatgagcc cgagaaggtg gtgaagcagt
1681gggaccatag tgaggatgag aaagagacag atgaggacga tgaggctttt ggggaagctc
1741tgcagagccc agcaagcgga aagcagagtg tggaagcagg aaaagccaga agcgatttgg
1801gagcagttgc caagggcctg tcaggagaat taggcacaag atcaggagaa acaggcagga
1861agctactaga agctggcaga agagagtcaa gagaaattta taggaggcct tcgggagaat
1921tagagcaaag actctcagga gaattcagca gacaggaacc agaagaacta aagaaacttt
1981cagaagtggg cagaagagag ccagaagaac tgggaaaaac acaatttgga gaaataggag
2041aaacgaaaaa aaacaggaaa tgcccaactt tcttgtacaa agtggttggt aagcctatcc
2101ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2161ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)