Construct: ORF ccsbBroad304_12792

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013760.1_s304c1, BRDN0000402990
Derived from:
ccsbBroadEn_12792
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP48 (84196)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12792
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84196 USP48 ubiquitin specific peptidas... NM_001032730.2 91.2% 89.8% 1302_1303insT;1329_1455del
2 human 84196 USP48 ubiquitin specific peptidas... XM_017002496.2 58.2% 57.4% 1302_1303insT;1329_2277del
3 human 84196 USP48 ubiquitin specific peptidas... XM_006710955.4 45.6% 44.9% 1302_1303insT;1329_2907del
4 human 84196 USP48 ubiquitin specific peptidas... NM_001350164.2 45.5% 44.8% 1169_1170insAGC;1299_1300insT;1326_2904del
5 human 84196 USP48 ubiquitin specific peptidas... NM_001330394.2 45% 44.3% 1302_1303insT;1329_2949del
6 human 84196 USP48 ubiquitin specific peptidas... NM_001350168.2 42.7% 42.1% 1302_1303insT;1329_3102del
7 human 84196 USP48 ubiquitin specific peptidas... NM_032236.8 42.7% 42.1% 1302_1303insT;1329_3105del
8 human 84196 USP48 ubiquitin specific peptidas... NM_001350166.2 42.7% 42% 1169_1170insAGC;1299_1300insT;1326_3099del
9 human 84196 USP48 ubiquitin specific peptidas... NM_001350167.2 42.6% 42% 1169_1170insAGC;1299_1300insT;1326_3102del
10 human 84196 USP48 ubiquitin specific peptidas... XM_011542264.1 36.2% 34.2% (many diffs)
11 human 84196 USP48 ubiquitin specific peptidas... XR_002957781.1 35.6% 1_218del;1520_1521insT;1547_3726del
12 human 84196 USP48 ubiquitin specific peptidas... XR_001737480.2 34.6% 1_218del;1520_1521insT;1547_3833del
13 human 84196 USP48 ubiquitin specific peptidas... XR_001737479.2 34.6% 1_218del;1520_1521insT;1547_3836del
14 human 84196 USP48 ubiquitin specific peptidas... XM_011542265.3 30.4% 29.8% 0_1ins381;921_922insT;948_2724del
15 human 84196 USP48 ubiquitin specific peptidas... XR_001737482.2 16.2% 1_218del;1520_1521insT;1547_8154del
16 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320011.1 38.1% 41.1% (many diffs)
17 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320009.1 37.5% 40.4% (many diffs)
18 mouse 170707 Usp48 ubiquitin specific peptidas... NM_001347227.1 37.5% 40.4% (many diffs)
19 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320010.1 37.4% 40.3% (many diffs)
20 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320013.1 37.4% 40.3% (many diffs)
21 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320006.1 36.8% 39.7% (many diffs)
22 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320005.1 36.8% 39.7% (many diffs)
23 mouse 170707 Usp48 ubiquitin specific peptidas... NM_130879.2 36.8% 39.6% (many diffs)
24 mouse 170707 Usp48 ubiquitin specific peptidas... XM_017320007.1 36.7% 39.6% (many diffs)
25 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784098.1 21.6% (many diffs)
26 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784100.1 20.3% (many diffs)
27 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784099.1 20.1% (many diffs)
28 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784101.1 19.4% (many diffs)
29 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784102.1 12% (many diffs)
30 mouse 170707 Usp48 ubiquitin specific peptidas... XR_001784103.1 12% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1395
ORF length:
1329
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cccgcggctg cagctggaga aggcggcctg gcgctgggcg gagacggtgc
121ggcccgagga ggtgtcgcag gagcacatcg agaccgctta ccgcatctgg ctggagccct
181gcattcgcgg cgtgtgcaga cgaaactgca aaggaaatcc gaattgcttg gttggtattg
241gtgagcatat ttggttagga gaaatagatg aaaatagttt tcataacatc gatgatccca
301actgtgagag gagaaaaaag aactcatttg tgggcctgac taaccttgga gccacttgtt
361atgtcaacac atttcttcaa gtgtggtttc tcaacttgga gcttcggcag gcactctact
421tatgtccaag cacttgtagt gactacatgc tgggagacgg catccaagaa gaaaaagatt
481atgagcctca aacaatttgt gagcatctcc agtacttgtt tgccttgttg caaaacagta
541ataggcgata cattgatcca tcaggatttg ttaaagcctt gggcctggac actggacaac
601agcaggatgc tcaagaattt tcaaagctct ttatgtctct attggaagat actttgtcta
661aacaaaagaa tccagatgtg cgcaatattg ttcaacagca gttctgtgga gaatatgcct
721atgtaactgt ttgcaaccag tgtggcagag agtctaagct tttgtcaaaa ttttatgagc
781tggagttaaa tatccaaggc cacaaacagt taacagattg tatctcggaa tttttgaagg
841aagaaaaatt agaaggagac aatcgctatt tttgcgagaa ctgtcaaagc aaacagaatg
901caacaagaaa gattcgactt cttagccttc cttgcactct gaacttgcag ctaatgcgtt
961ttgtctttga caggcaaact ggacataaga aaaagctgaa tacctacatt ggcttctcag
1021aaattttgga tatggagcct tatgtggaac ataaaggtgg gtcctacgtg tatgaactca
1081gcgcagtcct catacacaga ggagtgagtg cttattctgg ccactacatc gcccacgtga
1141aagatccaca gtctggtgaa tggtataagt ttaatgatga agacatagaa aagatggagg
1201ggaagaaatt acaactaggg attgaggaag atctagcaga accttctaag tctcagacac
1261gtaaacccaa gtgtggcaaa ggaactcatt gctctcgaaa tgcatatatg ttggtttata
1321gactgcaaac tcaagaaaag cccaacacta ctgttcaagt tccagccttt tcttcaagag
1381ctggtagatc gggataccca actttcttgt acaaagtggt tggtaagcct atccctaacc
1441ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1501cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)