Transcript: Human NM_001032730.2

Homo sapiens ubiquitin specific peptidase 48 (USP48), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
USP48 (84196)
Length:
2425
CDS:
243..1700

Additional Resources:

NCBI RefSeq record:
NM_001032730.2
NBCI Gene record:
USP48 (84196)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001032730.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000295937 TTGGTATTGGTGAGCATATTT pLKO_005 409 CDS 100% 15.000 21.000 N USP48 n/a
2 TRCN0000038831 GCGTAAGCAAAGTGTGGATAA pLKO.1 1613 CDS 100% 10.800 15.120 N USP48 n/a
3 TRCN0000298778 GCGTAAGCAAAGTGTGGATAA pLKO_005 1613 CDS 100% 10.800 15.120 N USP48 n/a
4 TRCN0000038832 CCACTTGTTATGTCAACACAT pLKO.1 529 CDS 100% 4.950 3.960 N USP48 n/a
5 TRCN0000298718 CCACTTGTTATGTCAACACAT pLKO_005 529 CDS 100% 4.950 3.960 N USP48 n/a
6 TRCN0000295936 GAATCCAGATGTGCGCAATAT pLKO_005 845 CDS 100% 13.200 9.240 N USP48 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001032730.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12792 pDONR223 100% 91.2% 89.8% None 1302_1303insT;1329_1455del n/a
2 ccsbBroad304_12792 pLX_304 0% 91.2% 89.8% V5 1302_1303insT;1329_1455del n/a
3 TRCN0000472881 AACGAATAAGCCATGACACAAATA pLX_317 42.9% 91.2% 89.8% V5 1302_1303insT;1329_1455del n/a
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