Construct: ORF ccsbBroad304_12988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015873.1_s304c1, BRDN0000409701
Derived from:
ccsbBroadEn_12988
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DMKN (93099)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12988
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93099 DMKN dermokine XM_006723494.2 93.6% 93.1% 1_27del;248A>C
2 human 93099 DMKN dermokine NM_001352329.2 89.5% 89% 221A>C;226_227ins42
3 human 93099 DMKN dermokine NM_001352330.2 89.5% 89% 221A>C;226_227ins42
4 human 93099 DMKN dermokine XM_024451778.1 89.5% 89% 221A>C;226_227ins42
5 human 93099 DMKN dermokine XM_024451779.1 89.5% 89% 221A>C;226_227ins42
6 human 93099 DMKN dermokine XM_024451777.1 84% 83.5% 1_27del;248A>C;253_254ins42
7 human 93099 DMKN dermokine XM_006723489.1 74.2% 73.9% 1_141del;362A>C
8 human 93099 DMKN dermokine XM_006723503.3 74.2% 73.9% 1_141del;362A>C
9 human 93099 DMKN dermokine XM_006723493.2 73.8% 73.4% 1_87del;308A>C;313_314ins42
10 human 93099 DMKN dermokine NM_001352328.2 73.4% 73.1% 1_147del;368A>C
11 human 93099 DMKN dermokine NM_001308380.2 67.3% 66.9% 1_198del;419A>C
12 human 93099 DMKN dermokine XM_011527513.1 66.3% 66% 1_207del;428A>C
13 human 93099 DMKN dermokine NM_001308383.2 65.9% 65.5% 1_147del;368A>C;373_374ins42
14 human 93099 DMKN dermokine XM_017027475.1 61.8% 61.5% 1_252del;473A>C
15 human 93099 DMKN dermokine XM_006723484.1 61.2% 60.9% 1_258del;479A>C
16 human 93099 DMKN dermokine NM_001126059.4 60.4% 60% 1_198del;419A>C;424_425ins42
17 human 93099 DMKN dermokine NM_001035516.4 58.3% 50% (many diffs)
18 human 93099 DMKN dermokine XM_024451776.1 57% 56.7% 1_234del;455A>C;460_461ins42
19 human 93099 DMKN dermokine XM_006723477.1 54% 53.7% 1_348del;569A>C
20 human 93099 DMKN dermokine NR_033746.2 40.9% 1_233del;454A>C;645_1001del
21 human 93099 DMKN dermokine NR_147959.2 33.6% (many diffs)
22 human 93099 DMKN dermokine NM_001190347.2 30.4% 30.2% 1_936del;1157A>C
23 human 93099 DMKN dermokine XM_011527508.2 29% 28.8% 1_1002del;1223A>C
24 human 93099 DMKN dermokine XM_011527507.2 28.7% 28.5% 1_1017del;1238A>C
25 human 93099 DMKN dermokine XM_011527506.2 28% 27.8% 1_1053del;1274A>C
26 human 93099 DMKN dermokine XM_011527505.2 27.8% 27.6% 1_1062del;1283A>C
27 human 93099 DMKN dermokine XM_011527504.2 27.3% 27.2% 1_1089del;1310A>C
28 human 93099 DMKN dermokine XM_011527503.2 27% 26.8% 1_1107del;1328A>C
29 human 93099 DMKN dermokine XM_011527502.2 26.9% 26.7% 1_1113del;1334A>C
30 human 93099 DMKN dermokine XM_011527501.2 26.3% 26.2% 1_1143del;1364A>C
31 human 93099 DMKN dermokine XM_011527500.2 26.2% 26.1% 1_1149del;1370A>C
32 human 93099 DMKN dermokine XM_011527499.2 26.1% 26% 1_1158del;1379A>C
33 human 93099 DMKN dermokine XM_011527509.2 26% 25.9% 1_1002del;1223A>C;1228_1229ins42
34 human 93099 DMKN dermokine XM_024451775.1 26% 25.9% 1_1002del;1223A>C;1228_1229ins42
35 human 93099 DMKN dermokine XM_011527496.2 25.9% 25.8% 1_1167del;1388A>C
36 human 93099 DMKN dermokine NM_001126056.3 25.6% 25.4% 1_1026del;1247A>C;1252_1253ins42
37 human 93099 DMKN dermokine XM_011527494.2 25.4% 25.2% 1_1203del;1424A>C
38 human 93099 DMKN dermokine XM_011527495.2 25.4% 25.2% 1_1203del;1424A>C
39 human 93099 DMKN dermokine NM_033317.5 25% 24.8% 1_1059del;1280A>C;1285_1286ins42
40 human 93099 DMKN dermokine XM_011527497.2 22.8% 22.6% 1_1203del;1424A>C;1429_1430ins42
41 human 93099 DMKN dermokine XM_011527498.2 22.8% 22.6% 1_1203del;1424A>C;1429_1430ins42
42 human 93099 DMKN dermokine XR_935872.2 18.1% 1_1406del;1627A>C;1818_2257del
43 human 93099 DMKN dermokine XR_935874.2 17.8% (many diffs)
44 human 93099 DMKN dermokine XR_935871.2 17.8% 1_1406del;1627A>C;1818_2292del
45 human 93099 DMKN dermokine XR_935873.2 16.3% (many diffs)
46 human 93099 DMKN dermokine XR_002958384.1 14.2% (many diffs)
47 human 93099 DMKN dermokine XR_002958383.1 14% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
477
ORF length:
411
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61tgggcatgtt taactttgac actttctgga agaattttaa atccaagctg ggtttcatca
121actgggatgc cataaacaag aaccaggtcc cgccccccag cacccgagcc ctcctctact
181tcagccgact ctgggaggat ttcaaacaga acactccttt cctcaactgg aaagcaatta
241ttgagggtgc ggacgcgtca tcactgcaga aacgtgcagg cagagccgat cagccgggtg
301caggatggca ggaggtggca gctgtaactt ccaagaacta caattacaac cagcatgcgt
361atcccactgc ctatggtggg aagtactcag tcaagacccc tgcaaagggg ggagtctcac
421cttcttcctc ggcttcccgg gtgcaacctg gcctgctgca gtgggtgaag ttttggtacc
481caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
541ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
601tta

Download FASTA (ORF) (Full)