Construct: ORF ccsbBroad304_12992

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004546.1_s304c1, BRDN0000403511
Derived from:
ccsbBroadEn_12992
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF561 (93134)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12992
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93134 ZNF561 zinc finger protein 561 NM_001330365.2 100% 100%
2 human 93134 ZNF561 zinc finger protein 561 XM_017027479.2 100% 100%
3 human 93134 ZNF561 zinc finger protein 561 XM_017027481.1 100% 100%
4 human 93134 ZNF561 zinc finger protein 561 XM_024451781.1 100% 100%
5 human 93134 ZNF561 zinc finger protein 561 XM_011528436.2 90.8% 90.8% 1_126del
6 human 93134 ZNF561 zinc finger protein 561 XM_011528437.2 90.8% 90.8% 1_126del
7 human 93134 ZNF561 zinc finger protein 561 XM_017027478.1 90.8% 90.8% 1_126del
8 human 93134 ZNF561 zinc finger protein 561 NM_152289.3 85.8% 85.8% 1_207del
9 human 93134 ZNF561 zinc finger protein 561 XM_005260150.2 85.8% 85.8% 1_207del
10 human 93134 ZNF561 zinc finger protein 561 XM_006722938.3 84.7% 84.7% 1_225del
11 human 93134 ZNF561 zinc finger protein 561 XM_011528434.2 84.7% 84.7% 1_225del
12 human 93134 ZNF561 zinc finger protein 561 XM_017027482.1 83.9% 83.9% 0_1ins201
13 human 93134 ZNF561 zinc finger protein 561 XM_024451780.1 83% 83% 1_255del
14 human 54811 ZNF562 zinc finger protein 562 XM_011528100.3 76.7% 71.8% (many diffs)
15 human 54811 ZNF562 zinc finger protein 562 NM_017656.4 74.6% 69.9% (many diffs)
16 human 54811 ZNF562 zinc finger protein 562 XM_005259944.4 71.3% 66.8% (many diffs)
17 human 54811 ZNF562 zinc finger protein 562 XM_011528102.3 69.5% 64.2% (many diffs)
18 human 54811 ZNF562 zinc finger protein 562 XM_005259951.4 69.3% 64.5% (many diffs)
19 human 54811 ZNF562 zinc finger protein 562 NM_001300885.2 66.1% 61.9% (many diffs)
20 human 54811 ZNF562 zinc finger protein 562 XM_017026898.2 66.1% 61.9% (many diffs)
21 human 54811 ZNF562 zinc finger protein 562 NM_001130031.2 66% 61.8% (many diffs)
22 human 54811 ZNF562 zinc finger protein 562 NM_001130032.2 66% 61.8% (many diffs)
23 human 54811 ZNF562 zinc finger protein 562 XM_005259941.4 66% 61.8% (many diffs)
24 human 54811 ZNF562 zinc finger protein 562 XM_005259952.4 63% 58.7% (many diffs)
25 human 54811 ZNF562 zinc finger protein 562 XM_017026899.2 63% 58.7% (many diffs)
26 human 729648 ZNF812P zinc finger protein 812, ps... NR_146446.1 39.4% (many diffs)
27 human 729648 ZNF812P zinc finger protein 812, ps... NR_146445.1 37.2% (many diffs)
28 human 729648 ZNF812P zinc finger protein 812, ps... NR_146444.1 36.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1317
ORF length:
1251
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct ggagaactac atgaacctgg cctctgtgga atgggaaata caacctagaa
121ccaaacggtc atcacttcag cagggttttt tgaagaatca aatattcagt gggatacaaa
181tgacaagagg ctacagtgga tggaaactct gtgactgtaa gaattgtgga gaggtcttca
241gggaacagtt ttgccttaag acacacatga gagttcagaa tggagggaat acttctgagg
301gtaattgtta tggaaaagac accctcagtg tgcacaagga agcctctact ggacaggaac
361tttccaaatt taatccatgt ggaaaagtct ttactctaac tccaggtctt gctgtacatc
421ttgaagttct caatgcaaga caaccctaca aatgtaagga atgtggaaaa ggctttaagt
481attttgcaag ccttgataat catatgggaa tccacactga tgagaaactc tgtgaatttc
541aggaatatgg gagagctgtc acagcttctt cacacctaaa gcagtgtgta gcagttcata
601caggaaagaa atccaaaaag actaagaaat gtgggaaatc cttcactaat ttttctcaac
661tttatgcacc tgtgaaaact cataaaggag agaagtcctt tgaatgtaaa gaatgtggaa
721gatcctttag aaattcctca tgccttaatg atcacattca aattcacact ggaataaaac
781cacacaagtg tacttactgt gggaaagcct tcactagatc aactcaactt actgaacatg
841taagaactca cactggaata aaaccctatg aatgtaagga atgtggccaa gcctttgctc
901agtactcggg cctttctata cacatacgaa gtcacagtgg aaagaaaccc tatcagtgta
961aggaatgtgg gaaagccttc actacatcca caagtcttat tcagcataca agaattcaca
1021caggagagaa gccttatgaa tgtgttgaat gtgggaagac cttcattact tcttcccgtc
1081gtagtaaaca tttgaaaact catagtggag aaaagccctt tgtatgcaag atatgtggga
1141aagcatttct atattcctca cgccttaatg ttcacctgcg aactcatacc ggagagaaac
1201ccttcgtatg taaagaatgt gggaaagcat ttgctgtttc ctcacgccta agtagacatg
1261aaagaattca cactggggag aaaccctatg aatgcaagga tatgagtgtt accatttacc
1321caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1381ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1441tta

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