Construct: ORF ccsbBroad304_13063

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016434.1_s304c1, BRDN0000403934
Derived from:
ccsbBroadEn_13063
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSX2IP (117178)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13063
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 117178 SSX2IP SSX family member 2 interac... XM_005270429.2 91% 90.7% (many diffs)
2 human 117178 SSX2IP SSX family member 2 interac... XM_017000235.2 91% 90.7% (many diffs)
3 human 117178 SSX2IP SSX family member 2 interac... XM_017000236.2 91% 90.7% (many diffs)
4 human 117178 SSX2IP SSX family member 2 interac... XM_024453015.1 91% 90.7% (many diffs)
5 human 117178 SSX2IP SSX family member 2 interac... NM_001166293.2 90.8% 90.5% (many diffs)
6 human 117178 SSX2IP SSX family member 2 interac... NM_001166417.2 90.8% 90.5% (many diffs)
7 human 117178 SSX2IP SSX family member 2 interac... NM_014021.4 90.8% 90.5% (many diffs)
8 human 117178 SSX2IP SSX family member 2 interac... XM_005270427.2 90.8% 90.5% (many diffs)
9 human 117178 SSX2IP SSX family member 2 interac... XM_005270428.2 90.8% 90.5% (many diffs)
10 human 117178 SSX2IP SSX family member 2 interac... XM_017000234.2 90.8% 90.5% (many diffs)
11 human 117178 SSX2IP SSX family member 2 interac... XM_024453018.1 90.1% 89.4% (many diffs)
12 human 117178 SSX2IP SSX family member 2 interac... XM_011540612.2 90% 89.2% (many diffs)
13 human 117178 SSX2IP SSX family member 2 interac... XM_017000237.2 86.6% 86.2% (many diffs)
14 human 117178 SSX2IP SSX family member 2 interac... NM_001166294.2 86.4% 86.1% (many diffs)
15 human 117178 SSX2IP SSX family member 2 interac... NM_001166295.1 86.4% 86.1% (many diffs)
16 human 117178 SSX2IP SSX family member 2 interac... XM_006710331.2 86.4% 86.1% (many diffs)
17 human 117178 SSX2IP SSX family member 2 interac... XR_946540.1 29% (many diffs)
18 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... NM_001253768.1 77.4% 81.4% (many diffs)
19 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... NM_001253769.1 77.4% 81.4% (many diffs)
20 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... NM_001253770.1 77.4% 81.4% (many diffs)
21 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... NM_138744.3 77.2% 81.3% (many diffs)
22 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... XM_006502404.3 77.2% 81.3% (many diffs)
23 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... XM_006502405.3 77.2% 81.3% (many diffs)
24 mouse 99167 Ssx2ip synovial sarcoma, X 2 inter... XM_006502406.3 77.2% 81.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg agattggatg actgttacag atccaggtct gtcttcagaa agcaaaacta
121tctctcaata tacctcagaa acaaagatgt ctccatcaag tttatactca cagcaagtgc
181tatgttcttc aataccttta tcgaaaaatg tgcacagttt tttcagtgcc ttctgcacag
241aagataatat tgaacagagt atctcatatc ttgatcagga attgactact tttggttttc
301cttcattata tgaagaatcc aaaggtaaag agacaaagag agagttaaat atagtagctg
361tactaaattg tatgaatgag ctgcttgtgc ttcagcggaa gaaccttcta gctcaggaaa
421atgtggagac acagaatttg aagctgggaa gtgatatgga ccatctacag agctgctact
481caaaacttaa ggaacaactg gaaacctcca ggagggaaat gattgggctt caggaaagag
541acagacagtt acaatgtaag aacaggaatt tgcatcagct actaaagaat gagaaagatg
601aggtgcaaaa attacaaaat atcattgcaa gtcgagctac tcagtataat catgatatga
661agagaaaaga gcgtgaatat aataaactga aggaacgtct acatcaactt gttatgaaca
721agaaagataa gaaaatagct atggacattt tgaattatgt cgggagagct gatggaaaaa
781gaggctcctg gaggactggt aaaactgaag ccaggaatga agatgaaatg tataaaattc
841tcttgaatga ttatgaatat cgtcagaaac aaatcctaat ggaaaatgca gaacttaaga
901aggttcttca acaaatgaaa aaggaaatga tttctcttct ttctccccaa aagaagaaac
961ctagagaaag agtagatgat agtacaggaa ctgttatttc cgatgttgaa gaagatgccg
1021gggaactaag cagagagagt atgtgggacc tttcctgtga aactgtgaga gagcagctta
1081caaacagcat cagaaaacag tggagaattt tgaaaagtca tgtagaaaag cttgataacc
1141aagtttcaaa ggtacacctg gaaggtttta atgatgaaga tgtaatctca cgacaagacc
1201atgaacaaga aactgaaaaa ctcgagttag aaattcagca gtgtaaagaa atgattaaaa
1261ctcagcaaca gcttttacag cagctcgcta ctgcatatga tgatgatacc acttcactat
1321tacgagactg ttatttgttg gaagaaaagg aacgtctcaa agaagaatgg tcccttttta
1381aagagcagaa aaagaatttt gagagggaga gacgaagctt tacagaagcc gctattcgcc
1441tgggattgga gagaaaggca tttgaagaag aaagagccag ttggttaaag cagcagtttc
1501taaatatgac tacctttgac caccagaact cagaaaatgt gaaacttttc agtgccttct
1561caggaagttc tgattgggac aatcttatag tgcactcgag gcagccgcaa aagaagcctc
1621acagtgtgtc taatgggtct ccagtttgca tgtctaaact tactaaatct cttcctgctt
1681caccttccac ttcagacttt tgccagacac gttcctgcat atctgaacat agggcaaaga
1741actgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1801tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1861tctggatta

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