Construct: ORF ccsbBroad304_13298
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003743.1_s304c1, BRDN0000398706
- Derived from:
- ccsbBroadEn_13298
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP6V0E2 (155066)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13298
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367791.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 2 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367792.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 3 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367793.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 4 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367794.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 5 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367795.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 6 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367796.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 7 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367797.1 | 27.1% | 14.3% | 1_196del;324_325ins148 |
| 8 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001367788.1 | 21.6% | 11.2% | 1_316del;444_445ins148 |
| 9 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001100592.2 | 16.2% | 8.3% | 1_511del;639_640ins148 |
| 10 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NM_001289990.1 | 14.9% | 7.6% | 1_580del;708_709ins148 |
| 11 | human | 155066 | ATP6V0E2 | ATPase H+ transporting V0 s... | NR_110612.1 | 9.7% | 1_1635del;1818A>G;1912_2808del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 342
- ORF length:
- 276
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc ctgctccaat acccgcactg ctctggagtt tgccctcttt cccaaggaga 121 tgctgctggg gagctggtat gggtggggtc tttcccttta cagacggggc agatgccagg 181 actcagccca tcctgaggag gacacgtgtc ctcatggaga gggtgctccg gcccaggcgg 241 gggagtcggt gcccagtcag cagctctgcc accatcctgc tgggaactgg gggggcctct 301 attgggttat aggcaaggcc ttttctctgg catggaattg ttacccaact ttcttgtaca 361 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 421 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta