Construct: ORF ccsbBroad304_13516
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017511.1_s304c1, BRDN0000406840
- Derived from:
- ccsbBroadEn_13516
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTLL6 (284076)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13516
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | NM_173623.3 | 97.3% | 97.2% | 1_45del;71A>T |
| 2 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024496.1 | 96.1% | 95.2% | (many diffs) |
| 3 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024495.2 | 87% | 86.2% | (many diffs) |
| 4 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024492.1 | 76% | 75.3% | (many diffs) |
| 5 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024493.2 | 76% | 75.3% | (many diffs) |
| 6 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024494.2 | 76% | 75.3% | (many diffs) |
| 7 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | XM_017024491.2 | 63.1% | 62.5% | (many diffs) |
| 8 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | NM_001130918.3 | 63% | 62.5% | (many diffs) |
| 9 | human | 284076 | TTLL6 | tubulin tyrosine ligase like 6 | NM_001366314.2 | 50.1% | 47.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1773
- ORF length:
- 1707
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ggggtgtctc ggggtagcag tactaaggaa gctctccacc ttcagtgcat 121 acttggagga ccacagctac aacgtggagc agatatggag ggatattgag gacgtcatca 181 tcaagaccct catctcggcc caccccatca tcaggcataa ctaccacacc tgcttcccca 241 accacacact caacagcgcc tgctttgaga tcctgggctt tgacattttg ttggaccaca 301 aactcaaacc ctggctgctg gaggtcaacc actctccaag cttctccacc gactctcggt 361 tggataaaga ggtgaaagat ggtctgctgt atgacacctt agtcctgatc aacctggaaa 421 gctgtgacaa gaagaaagtc ttggaggagg agagacaacg ggggcagttc ctgcagcagt 481 gttgttctcg ggagatgagg attgaggaag ccaagggttt ccgggccgtg cagttaaaga 541 aaactgaaac gtatgagaag gaaaactgtg gagggttccg actgatttat cccagtctga 601 attcggagaa gtatgagaag tttttccagg acaacaactc cctcttccag aatactgttg 661 cttccagggc tcgggaggag tatgcccggc aactgatcca ggagctgaga ctaaaacggg 721 agaaaaagcc cttccaaatg aagaagaagg tagagatgca gggggaatcg gcaggcgagc 781 aagtgagaaa gaagggcatg aggggctggc aacagaaaca acagcagaaa gacaaggccg 841 ccacccaagc ctccaaacag tacatccagc cattgacatt agtatcctac acacctgact 901 tgctcttgag tgtcagaggt gaaaggaaaa atgaaacaga cagcagcctc aaccaggagg 961 ctcccacgga ggaggccagc tctgttttcc ccaagctgac gtctgcgaag cccttcagtt 1021 ctctacccga tctgaggaat atcaatctca gcagctcgaa gttggagccc agtaaaccca 1081 acttcagcat caaggaggcc aagtctgcct ctgcagtgaa cgtattcact ggcactgtgc 1141 acttaacctc cgtagaaacc accccagaat ccaccaccca actctcaatc tccccaaagt 1201 ctccgccaac cctggctgtg accgccagct ctgagtacag tggcccagag acggacaggg 1261 tggtatcctt taaatgcaag aagcagcaga cccctccaca cttaacccag aagaaaatgt 1321 taaaatcttt tctgcccaca aaatccaaga gcttctggga gagtccgaac acaaactgga 1381 ctttgctaaa gagtgacatg aacaagccac atttgatatc cgagctactc accaagcttc 1441 aactgagtgg gaagctctcc ttcttcccag ctcactacaa ccccaagctg gggatgaata 1501 acctgtcaca aaacccctcc ctgcctgggg agtgccactc ccgcagtgac agctctggcg 1561 agaagaggca gctggatgtg tcctccctcc tcttgcagag tcctcagagc tataatgtta 1621 ctctgaggga cctgctggtg attgccactc cagcccaact ggatccaagg ccttgtagaa 1681 gccacgcaag tgctatgagg gacccatgta tgcaggatca agaagcatac agccattgcc 1741 tgatctctgg ccaaaaagga tgtgagagga gctacccaac tttcttgtac aaagtggttg 1801 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 1861 accggtggcg cgttaagtcg acaatcaacc tctggatta