Construct: ORF ccsbBroad304_13601
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000429.1_s304c1, BRDN0000462121
- Derived from:
- ccsbBroadEn_13601
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H12B (340554)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13601
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | NM_001010888.3 | 98.6% | 98.6% | 1_33del |
| 2 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_011530939.2 | 98.6% | 98.6% | 1_33del |
| 3 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029478.1 | 98.6% | 98.6% | 1_33del |
| 4 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029479.1 | 98.6% | 98.6% | 1_33del |
| 5 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029480.1 | 98.6% | 98.6% | 1_33del |
| 6 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029481.1 | 98.6% | 98.6% | 1_33del |
| 7 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029482.1 | 98.6% | 98.6% | 1_33del |
| 8 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029483.1 | 98.6% | 98.6% | 1_33del |
| 9 | human | 340554 | ZC3H12B | zinc finger CCCH-type conta... | XM_017029484.1 | 98.6% | 98.6% | 1_33del |
| 10 | mouse | 547176 | Zc3h12b | zinc finger CCCH-type conta... | NM_001034907.2 | 88% | 89.3% | (many diffs) |
| 11 | mouse | 547176 | Zc3h12b | zinc finger CCCH-type conta... | XM_011247640.2 | 88% | 89.3% | (many diffs) |
| 12 | mouse | 547176 | Zc3h12b | zinc finger CCCH-type conta... | XM_011247641.2 | 88% | 89.3% | (many diffs) |
| 13 | mouse | 547176 | Zc3h12b | zinc finger CCCH-type conta... | XM_011247642.2 | 81.4% | 80.8% | (many diffs) |
| 14 | mouse | 547176 | Zc3h12b | zinc finger CCCH-type conta... | XM_011247643.2 | 81% | 80.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2544
- ORF length:
- 2475
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagaagagt gcctccaagg aagagaagca gcagcctaag caggacagca 121 cagagcaggg caatgctgat tctgaagagt ggatgagctc tgagagtgac cctgaacaga 181 taagccttaa gagtagcgac aacagcaaga gctgccaacc tagggatggt cagttgaaga 241 aaaaggagat gcactccaag ccacaccgcc agctctgtcg atcaccctgc ctagatcgtc 301 caagtttctc ccagagcagc attttacagg atggtaaact tgacttggag aaggaatacc 361 aagctaagat ggagtttgcg ctaaagctgg gctatgcaga ggaacagatt caatcagtgc 421 taaacaagct gggcccagaa tcacttatta atgatgtatt ggcagagctt gtcagacttg 481 ggaacaaagg tgattcagaa gggcagatca acttgagtct gttagtgcct cgtgggccca 541 gctccagaga gattgcaagc cctgaattgt ctcttgaaga tgaaatagat aacagtgaca 601 atttgaggcc agttgtcatt gatggaagta atgtggcaat gagccatggg aataaagaag 661 aattctcctg cagaggaata caacttgctg tggattggtt tctagataaa ggccataaag 721 atattactgt atttgtgcct gcatggagaa aggagcaatc ccgccctgat gcaccaatta 781 cagatcaaga tattctacga aaactggaga aggaaaagat tcttgtcttc acaccatccc 841 gaagagtcca aggcaggagg gttgtctgct atgatgaccg gttcatagtc aaactggctt 901 ttgattctga tggcatcatt gtgtccaatg ataactaccg agaccttcaa gttgaaaagc 961 cagaatggaa gaagtttata gaggagcggt tgctgatgta ttcttttgtg aatgacaaat 1021 ttatgcctcc agatgatcca ttaggacgcc acggcccaag ccttgaaaat ttcttaagaa 1081 agagacccat tgttcctgag cataagaagc aaccatgtcc ttatggcaaa aaatgcacct 1141 acggccacaa gtgcaaatac taccatccgg agcgggccaa ccaaccccag cgttcggtgg 1201 ctgatgagct ccgcatcagt gccaaactgt ccacagtgaa aactatgagt gaaggcaccc 1261 tggccaagtg tggcacaggg atgtctagtg ccaaaggtga gataacctca gaggtcaaac 1321 gtgtggcccc caagcgccaa tcagatccca gcatccggtc tgtggctatg gagcctgagg 1381 aatggctgtc cattgcccgt aagcctgagg ctagttctgt cccctcgctt gtgactgccc 1441 taagtgttcc cacaatccca ccccccaaaa gccatgcagt gggtgcactc aacacccgtt 1501 cggccagcag cccagtgcca ggatcctccc atttccccca ccagaaggcc tctttggagc 1561 atatggccag catgcagtat cctcccatct tggttaccaa cagccatggg acccctatta 1621 gctatgctga gcaataccca aagtttgaat ccatggggga ccatggctac tattcaatgt 1681 taggtgactt ctccaaactg aacatcaaca gcatgcataa ccgagagtat tacatggctg 1741 aagtagaccg gggggtgtat gcccggaatc ctaacctctg ttctgacagc cgtgtgagcc 1801 ataccaggaa tgacaactat tcctcttaca acaacgtgta tttggctgta gctgataccc 1861 atcctgaagg caatttgaag ctgcaccgct cagcatccca gaaccgactt cagccttttc 1921 ctcatggtta ccatgaagcc ttaacacgag tgcagagcta tggcccagag gattctaagc 1981 aaggccccca caaacagtca gtcccccact tagctctgca tgcccagcac ccatcaactg 2041 gaacacgttc cagctgtcct gcagactacc ccatgcctcc caatatccat cctggggcaa 2101 ccccccagcc aggccgtgcc ctggtgatga ctcggatgga tagcatttcc gactcccgcc 2161 tctatgagag caaccccgtg aggcaaagac gacctcccct gtgccgggaa cagcatgcca 2221 gctgggaccc gctgccctgt acaactgact cctatggcta ccactcctat cccttgagta 2281 acagcctcat gcaaccatgt tatgagccag tcatggtacg gagcgtgcct gaaaagatgg 2341 agcagctttg gaggaatcct tgggttggaa tgtgcaatga ttccagggag catatgatcc 2401 cagaacacca gtatcagacc tacaagaacc tctgcaatat tttcccttct aacatcgtcc 2461 ttgcagtgat ggagaagaat ccccacacag cagatgccca gcaactggca gccttgattg 2521 ttgctaagct tagggctgca cgtttgccaa ctttcttgta caaagtggtt ggtaagccta 2581 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 2641 gcgttaagtc gacaatcaac ctctggatta