Construct: ORF ccsbBroad304_13732
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011986.1_s304c1, BRDN0000408837
- Derived from:
- ccsbBroadEn_13732
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM153CP (653316)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13732
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285596 | FAM153A | family with sequence simila... | XM_011534528.2 | 56% | 55.6% | (many diffs) |
| 2 | human | 202134 | FAM153B | family with sequence simila... | NM_001265615.1 | 46.2% | 45.8% | (many diffs) |
| 3 | human | 285596 | FAM153A | family with sequence simila... | NM_173663.4 | 46.1% | 45.8% | (many diffs) |
| 4 | human | 285596 | FAM153A | family with sequence simila... | XM_006714848.3 | 46.1% | 45.8% | (many diffs) |
| 5 | human | 285596 | FAM153A | family with sequence simila... | XM_006714849.3 | 46.1% | 45.8% | (many diffs) |
| 6 | human | 285596 | FAM153A | family with sequence simila... | XM_011534521.3 | 46.1% | 45.8% | (many diffs) |
| 7 | human | 285596 | FAM153A | family with sequence simila... | XM_011534522.2 | 46.1% | 45.8% | (many diffs) |
| 8 | human | 285596 | FAM153A | family with sequence simila... | XM_011534523.2 | 46.1% | 45.8% | (many diffs) |
| 9 | human | 285596 | FAM153A | family with sequence simila... | XM_017009366.1 | 46.1% | 45.8% | (many diffs) |
| 10 | human | 285596 | FAM153A | family with sequence simila... | XM_017009367.1 | 46.1% | 45.8% | (many diffs) |
| 11 | human | 285596 | FAM153A | family with sequence simila... | XM_017009369.1 | 46.1% | 45.8% | (many diffs) |
| 12 | human | 285596 | FAM153A | family with sequence simila... | XM_017009370.1 | 46.1% | 45.8% | (many diffs) |
| 13 | human | 285596 | FAM153A | family with sequence simila... | XM_017009365.1 | 43% | 42.7% | (many diffs) |
| 14 | human | 285596 | FAM153A | family with sequence simila... | XM_017009363.1 | 42.8% | 42.5% | (many diffs) |
| 15 | human | 285596 | FAM153A | family with sequence simila... | XM_017009364.1 | 42.8% | 42.5% | (many diffs) |
| 16 | human | 285596 | FAM153A | family with sequence simila... | XM_017009362.1 | 42.1% | 41.8% | (many diffs) |
| 17 | human | 285596 | FAM153A | family with sequence simila... | XM_011534520.2 | 37.1% | 36.8% | (many diffs) |
| 18 | human | 285596 | FAM153A | family with sequence simila... | XM_005265889.3 | 36.9% | 36.6% | (many diffs) |
| 19 | human | 285596 | FAM153A | family with sequence simila... | XM_017009352.1 | 36.9% | 36.6% | (many diffs) |
| 20 | human | 285596 | FAM153A | family with sequence simila... | XM_017009353.1 | 36.9% | 36.6% | (many diffs) |
| 21 | human | 285596 | FAM153A | family with sequence simila... | XM_017009354.1 | 36.9% | 36.6% | (many diffs) |
| 22 | human | 285596 | FAM153A | family with sequence simila... | XM_017009355.1 | 36.9% | 36.6% | (many diffs) |
| 23 | human | 285596 | FAM153A | family with sequence simila... | XM_017009356.1 | 36.9% | 36.6% | (many diffs) |
| 24 | human | 285596 | FAM153A | family with sequence simila... | XM_017009357.1 | 36.9% | 36.6% | (many diffs) |
| 25 | human | 285596 | FAM153A | family with sequence simila... | XM_017009358.1 | 36.9% | 36.6% | (many diffs) |
| 26 | human | 285596 | FAM153A | family with sequence simila... | XM_017009359.1 | 36.9% | 36.6% | (many diffs) |
| 27 | human | 285596 | FAM153A | family with sequence simila... | XM_017009360.1 | 36.9% | 36.6% | (many diffs) |
| 28 | human | 285596 | FAM153A | family with sequence simila... | XM_017009361.1 | 36.9% | 36.6% | (many diffs) |
| 29 | human | 653316 | FAM153CP | family with sequence simila... | NR_159407.1 | 35.7% | 1_241del;674_1210del | |
| 30 | human | 653316 | FAM153CP | family with sequence simila... | NR_149722.1 | 16.9% | 1_555del;988_2552del | |
| 31 | human | 285596 | FAM153A | family with sequence simila... | NR_146227.1 | 9.1% | (many diffs) | |
| 32 | human | 285596 | FAM153A | family with sequence simila... | NR_146226.1 | 8.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 501
- ORF length:
- 432
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggtggacaaa gacacagaga gagacattga gatgaaacgg caactacggc 121 gactacggga gctccaccta tacagcacat ggaagaagta ccaagaggcg atgaagacat 181 ccttgggagt tccacaacgt ggtgacctgg aagacctgga ggagcatctg ccagggcaga 241 cagtctctga ggaagccaca ggggttcaca tgatgcaggt ggacccagcc acaccggcaa 301 agaaattgga agactccacc attacaggca gccaccagca gatgtcagca agtccttcct 361 ctgcacctgc agaagaagca acagaaaaga ccaaagtgga agaggaagtg aaaaccagaa 421 agcccaagaa gaaaaccagg aagcccagca agaaaagccg gtggaatgtc ctgaaatgtt 481 gggacatttt taatatattt ttgccaactt tcttgtacaa agtggttggt aagcctatcc 541 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 601 ttaagtcgac aatcaacctc tggatta