Construct: ORF ccsbBroad304_13827
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011274.1_s304c1, BRDN0000401999
- Derived from:
- ccsbBroadEn_13827
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH3 (1001)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13827
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1001 | CDH3 | cadherin 3 | NM_001317195.2 | 99.7% | 99.8% | (many diffs) |
| 2 | human | 1001 | CDH3 | cadherin 3 | XM_011522800.3 | 95.7% | 93% | (many diffs) |
| 3 | human | 1001 | CDH3 | cadherin 3 | NM_001793.6 | 92.8% | 92% | (many diffs) |
| 4 | human | 1001 | CDH3 | cadherin 3 | NM_001317196.2 | 86.2% | 85.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2421
- ORF length:
- 2352
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggggctccct cgtggacctc tcgcgtctct cctccttctc caggtttgct 121 ggctgcagtg cgcggcctcc gagccgtgcc gggcggtctt cagggaggct gaagtgacct 181 tggaggcggg aggcgcggag caggagcccg gccaggcgct ggggaaagta ttcatgggct 241 gccctgggca agagccagct ctgtttagca ctgataatga tgacttcact gtgcggaatg 301 gcgagacagt ccaggaaaga aggtcactga aggaaaggaa tccattgaag atcttcccat 361 ccaaacgtat cttacgaaga cacaagagag attgggtggt tgctccaata tctgtccctg 421 aaaatggcaa gggtcccttc ccccagagac tgaatcagct caagtctaat aaagatagag 481 acaccaagat tttctacagc atcacggggc cgggggcaga cagcccccct gagggtgtct 541 tcgctgtaga gaaggagaca ggctggttgt tgttgaataa gccactggac cgggaggaga 601 ttgccaagta tgagctcttt ggccacgctg tgtcagagaa tggtgcctca gtggaggacc 661 ccatgaacat ctccatcatc gtgaccgacc agaatgacca caagcccaag tttacccagg 721 acaccttccg agggagtgtc ttagagggag tcctaccagg tacttctgtg atgcaggtga 781 cagccacaga tgaggatgat gccatctaca cctacaatgg ggtggttgct tactccatcc 841 atagccaaga accaaaggac ccacacgacc tcatgttcac aattcaccgg agcacaggca 901 ccatcagcgt catctccagt ggcctggacc gggaaaaagt ccctgagtac acactgacca 961 tccaggccac agacatggat ggggacggct ccaccaccac ggcagtggca gtagtggaga 1021 tccttgatgc caatgacaat gctcccatgt ttgaccccca gaagtacgag gcccatgtgc 1081 ctgagaatgc agtgggccat gaggtgcaga ggctgacggt cactgatctg gacgccccca 1141 actcaccagc gtggcgtgcc acctacctta tcatgggcgg tgacgacggg gaccatttta 1201 ccatcaccac ccaccctgag agcaaccagg gcatcctgac aaccaggaag ggtttggatt 1261 ttgaggccaa aaaccagcac accctgtacg ttgaagtgac caacgaggcc ccttttgtgc 1321 tgaagctccc aacctccaca gccaccatag tggtccacgt ggaggatgtg aatgaggcac 1381 ctgtgtttgt cccaccctcc aaagtcgttg aggtccagga gggcatcccc actggggagc 1441 ctgtgtgtgt ctacactgca gaagaccctg acaaggagaa tcaaaagatc agctaccgca 1501 tcctgagaga cccagcaggg tggctagcca tggacccaga cagtgggcag gtcacagctg 1561 tgggcaccct cgaccgtgag gatgagcagt ttgtgaggaa caacatctat gaagtcatgg 1621 tcttggccat ggacaatgga agccctccca ccactggcac gggaaccctt ctgctaacac 1681 tgattgatgt caacgaccat ggcccagtcc ctgagccccg tcagatcacc atctgcaacc 1741 aaagccctgt gcgccaggtg ctgaacatca cggacaagga cctgtctccc cacacctccc 1801 ctttccaggc ccagctcaca gatgactcag acatctactg gacggcagag gtcaacgagg 1861 aaggtgacac agtggtcttg tccctgaaga agttcctgaa gcaggataca tatgacgtgc 1921 acctttctct gtctgaccat ggcaacaaag agcagctgac ggtgatcagg gccactgtgt 1981 gcgactgcca tggccatgtc gaaacctgcc ctggaccctg gaaaggaggt ttcatcctcc 2041 ctgtgctggg ggctgtcctg gctctgctgt tcctcctgct ggtgctgctt ttgttggtga 2101 gaaagaagcg gaagatcaag gagcccctcc tactcccaga agatgacacc cgtgacaacg 2161 tcttctacta tggcgaagag gggggtggcg aagaggacca ggactatgac atcacccagc 2221 tccaccgagg tctggaggcc aggccggagg tggttctccg caatgacgtg gcaccaacca 2281 tcatcccgac acccatgtac cgtcctaggc cagccaaccc agatgaaatc ggcaacttta 2341 taattgaggg gaggggagag aggggctcac agagaggaaa tggaggcttg cagctggcaa 2401 gaggcaggnc ccgccgctcc ttgccaactt tcttgtacaa agtggttggt aagcctatcc 2461 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 2521 ttaagtcgac aatcaacctc tggatta