Transcript: Human NM_001317195.2

Homo sapiens cadherin 3 (CDH3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
CDH3 (1001)
Length:
3326
CDS:
71..2425

Additional Resources:

NCBI RefSeq record:
NM_001317195.2
NBCI Gene record:
CDH3 (1001)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001317195.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054018 CCCAGATGAAATCGGCAACTT pLKO.1 2320 CDS 100% 4.950 6.930 N CDH3 n/a
2 TRCN0000422333 TCATCGTGACCGACCAGAATG pLKO_005 678 CDS 100% 10.800 7.560 N CDH3 n/a
3 TRCN0000423836 TCCCATCCAAACGTATCTTAC pLKO_005 357 CDS 100% 10.800 7.560 N CDH3 n/a
4 TRCN0000054022 CAGCTCTGTTTAGCACTGATA pLKO.1 258 CDS 100% 4.950 3.465 N CDH3 n/a
5 TRCN0000054021 CCTACCAGGTACTTCTGTGAT pLKO.1 754 CDS 100% 4.950 3.465 N CDH3 n/a
6 TRCN0000054020 GCAGTTTGTGAGGAACAACAT pLKO.1 1588 CDS 100% 4.950 3.465 N CDH3 n/a
7 TRCN0000054019 CCAGAGACTGAATCAGCTCAA pLKO.1 445 CDS 100% 4.050 2.835 N CDH3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001317195.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13827 pDONR223 100% 99.7% 99.8% None (many diffs) n/a
2 ccsbBroad304_13827 pLX_304 0% 99.7% 99.8% V5 (many diffs) n/a
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