Construct: ORF ccsbBroad304_13881
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012017.1_s304c1, BRDN0000400289
- Derived from:
- ccsbBroadEn_13881
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SP110 (3431)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13881
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3431 | SP110 | SP110 nuclear body protein | NM_004510.4 | 99.3% | 1.9% | (many diffs) |
| 2 | human | 3431 | SP110 | SP110 nuclear body protein | NM_001185015.2 | 98.2% | 1.9% | (many diffs) |
| 3 | human | 3431 | SP110 | SP110 nuclear body protein | XM_024452851.1 | 90.9% | 2.1% | (many diffs) |
| 4 | human | 3431 | SP110 | SP110 nuclear body protein | XM_017003969.1 | 89.9% | 2.1% | (many diffs) |
| 5 | human | 3431 | SP110 | SP110 nuclear body protein | XM_006712489.4 | 82.9% | 1.6% | (many diffs) |
| 6 | human | 3431 | SP110 | SP110 nuclear body protein | XM_011511091.3 | 80% | 1.6% | (many diffs) |
| 7 | human | 3431 | SP110 | SP110 nuclear body protein | NM_004509.4 | 78% | 1.5% | (many diffs) |
| 8 | human | 3431 | SP110 | SP110 nuclear body protein | XM_006712487.3 | 77.4% | 1.5% | (many diffs) |
| 9 | human | 3431 | SP110 | SP110 nuclear body protein | XM_024452850.1 | 75.8% | 1.8% | (many diffs) |
| 10 | human | 3431 | SP110 | SP110 nuclear body protein | NM_080424.2 | 75.5% | 1.5% | (many diffs) |
| 11 | human | 3431 | SP110 | SP110 nuclear body protein | XM_005246525.4 | 74.8% | 1.5% | (many diffs) |
| 12 | human | 3431 | SP110 | SP110 nuclear body protein | XM_011511089.3 | 72.8% | 1.4% | (many diffs) |
| 13 | human | 3431 | SP110 | SP110 nuclear body protein | XM_011511088.3 | 72.2% | 1.4% | (many diffs) |
| 14 | human | 3431 | SP110 | SP110 nuclear body protein | XM_017003968.2 | 72.2% | 1.4% | (many diffs) |
| 15 | human | 3431 | SP110 | SP110 nuclear body protein | XM_011511090.3 | 66% | 1.5% | (many diffs) |
| 16 | human | 3431 | SP110 | SP110 nuclear body protein | XM_011511092.3 | 45.5% | 1.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 177
- ORF length:
- 111
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtt caccatgaca gagccatgga agaggctctt tttcagcact tcatgcacca 121 gaagctgggg atcgcctatg ccatacacaa gccatttccc ttctttgaag gcctcctaga 181 caactccatc atcactaaga gaatgtacat ggaatctctg gaagcctgta gaaatttgat 241 ccctgtatcc agagtggtgc acaacattct cacccaactg gagaggactt ttaacctgtc 301 tcttctggtg acattgttca gtcaaattaa cctgcgtgaa tatcccaatc tggtgacgat 361 ttacagaagc ttcaaacgtg ttggtgcttc ctatgaacgg cagagcagag acacaccaat 421 cctacttgaa gccccaactg gcctagcaga aggaagctcc ctccataccc cactggcgct 481 gcccccacca caaccccctc aaccaagctg ttcaccctgt gcgccaagag tcagtgagcc 541 tggaacatcc tcccagcaaa gcgatgagat cctgagtgag tcgcccagcc catctgaccc 601 tgtcctgcct ctccctgcac tcatccagga aggaagaagc acttcagtga ccaatgacaa 661 gttaacatcc aaaatgaatg cggaagaaga ctcagaagag atgcccagcc tcctcactag 721 cactgtgcaa gtggccagtg acaacctgat cccccaaata agagataaag aagaccctca 781 agagatgccc cactctccct tgggctctat gccagagata agagataatt ctccagaacc 841 aaatgaccca gaagagcccc aggaggtgtc cagcacacct tcagacaaga aaggaaagaa 901 aagaaaaaga tgtatctggt caactccaaa aaggagacat aagaaaaaaa gcctcccaag 961 agccttatct agacacggaa tccaaaagaa gctcaaaagg gtggatcagg ttcctcaaaa 1021 gaaagatgac tcaacttgta actccacggt agagacaagg gcccaaaagg cgagaactga 1081 atgtgcccga aagtcgagat cagaggagat cattgatggc acttcagaaa tgaatgaagg 1141 aaagaggtcc cagaagacgc ctagtacacc acgaagggtc acacaagggg cagcctcacc 1201 tgggcatggc atccaagaga agctccaagt ggtggataag gtgactcaaa ggaaagacga 1261 ctcaacctgg aactcagagg tcatgatgag ggtccaaaag gcaagaacta aatgtgcccg 1321 aaagtccaga tcgaaagaaa agaaaaagga gaaagatatc tgttcaagct caaaaaggag 1381 atttcagaaa aatattcacc gaagaggaaa acccaaaagt gacactgtgg attttcactg 1441 ttctaagctc cccgtgacct gtggtgaggc gaaagggatt ttatataaga agaaaatgaa 1501 acacggatcc tcagtgaagt gcattcggaa tgaggatgga acttggttaa caccaaatga 1561 atttgaagtc gaaggaaaag gaaggaacgc aaagaactgg aaacggaata tacgttgtga 1621 aggaatgacc ctaggagagc tgctgaagag tggacttttg ctctgtcctc caagaataaa 1681 tctcaagaga gagttaaata gcaagtgccc aactttcttg tacaaagtgg ttggtaagcc 1741 tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg 1801 gcgcgttaag tcgacaatca acctctggat ta