Construct: ORF ccsbBroad304_13935

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008867.1_s304c1, BRDN0000408333
Derived from:
ccsbBroadEn_13935
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPN3 (5774)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13935
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5774 PTPN3 protein tyrosine phosphatas... NM_002829.4 99.9% 99.8% 2736delT
2 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717199.3 99.9% 99.8% 2736delT
3 human 5774 PTPN3 protein tyrosine phosphatas... XM_011518889.2 99.9% 99.8% 2736delT
4 human 5774 PTPN3 protein tyrosine phosphatas... XM_017014955.1 99.9% 99.8% 2736delT
5 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717197.3 98.7% 98.7% 1_33del;2769delT
6 human 5774 PTPN3 protein tyrosine phosphatas... XM_011518888.2 97.7% 97.6% 1_63del;2799delT
7 human 5774 PTPN3 protein tyrosine phosphatas... NM_001145368.2 95% 94.9% 1001_1002ins135;2601delT
8 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717201.3 88% 86.6% 0_1ins248;39_40ins79;2409delT
9 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717202.3 87.1% 86.9% (many diffs)
10 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717203.4 87.1% 86.9% (many diffs)
11 human 5774 PTPN3 protein tyrosine phosphatas... NM_001145369.1 85.6% 85.5% 0_1ins393;2343delT
12 human 5774 PTPN3 protein tyrosine phosphatas... XM_006717204.3 85.6% 85.5% 0_1ins393;2343delT
13 human 5774 PTPN3 protein tyrosine phosphatas... XM_017014956.1 83% 81.7% (many diffs)
14 human 5774 PTPN3 protein tyrosine phosphatas... NM_001145370.1 80.6% 80.6% 0_1ins393;608_609ins135;2208delT
15 human 5774 PTPN3 protein tyrosine phosphatas... XM_017014957.1 80.6% 80.6% 0_1ins393;608_609ins135;2208delT
16 human 5774 PTPN3 protein tyrosine phosphatas... NM_001145371.2 68.5% 68.4% 0_1ins861;1875delT
17 human 5774 PTPN3 protein tyrosine phosphatas... NM_001145372.2 63.5% 63.5% 0_1ins861;140_141ins135;1740delT
18 human 5774 PTPN3 protein tyrosine phosphatas... NR_026918.1 23.5% (many diffs)
19 mouse 545622 Ptpn3 protein tyrosine phosphatas... NM_011207.2 87.1% 91.8% (many diffs)
20 mouse 545622 Ptpn3 protein tyrosine phosphatas... XM_006538098.2 87.1% 91.8% (many diffs)
21 mouse 545622 Ptpn3 protein tyrosine phosphatas... XM_006538099.3 87.1% 91.8% (many diffs)
22 mouse 545622 Ptpn3 protein tyrosine phosphatas... XM_006538100.2 87.1% 91.8% (many diffs)
23 mouse 545622 Ptpn3 protein tyrosine phosphatas... XM_006538097.3 85% 89.7% (many diffs)
24 mouse 545622 Ptpn3 protein tyrosine phosphatas... XM_006538101.3 74.8% 79% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2808
ORF length:
2739
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gacctcccgg ttacgtgcgt tgggtggaag aattaataat atacgcacct
121cggagttacc caaagagaaa actcgatcag aagtcatttg cagcatccac tttttagatg
181gcgtggtaca gacctttaaa gttactaaac aagacactgg ccaggttctt ctggatatgg
241tgcacaacca cctgggtgtg actgaaaagg aatattttgg tttacagcat gatgacgact
301ccgtggactc tcctagatgg ctggaagcaa gcaaagccat caggaagcag ttaaaaggag
361gtttcccctg taccctgcat tttcgagtaa gattttttat acctgatccc aacacactgc
421agcaagaaca aaccaggcac ttgtatttct tacaactgaa gatggatatt tgcgaaggaa
481ggttaacctg ccctcttaac tcagcagtgg ttctagcgtc ctatgccgta caatctcatt
541ttggagacta taattcttcc atacatcatc caggctatct ttccgatagt cactttatac
601ccgatcaaaa tgaggacttt ttaacaaaag tcgaatctct gcatgagcag cacagtgggc
661taaaacaatc agaagcagaa tcctgctata tcaacatagc gcggaccctc gacttctatg
721gagtagaact gcacagtggt agggatctgc acaatttaga cctaatgatt ggaattgctt
781ccgcgggtgt tgctgtgtac cgaaaataca tttgcacaag tttctatcct tgggtgaaca
841ttctcaaaat ttctttcaaa aggaaaaagt tcttcataca tcagcgacag aaacaggctg
901aatccaggga acatattgtg gccttcaaca tgctgaatta ccgatcttgc aaaaacttgt
961ggaaatcctg tgttgagcac catacgttct ttcaggcaaa gaagctacta cctcaggaaa
1021agaatgttct gtctcagtac tggactatgg gctctcggaa caccaaaaag tcggtaaata
1081accaatattg caaaaaggtg attggcggga tggtgtggaa cccagccatg cggagatcct
1141tatcagtgga gcacttagaa accaagagtc tgccttctcg ttcccctccc attactccca
1201actggcgaag tcctcggctc cggcacgaaa tccgaaagcc acgccactct tctgcagata
1261accttgcaaa tgaaatgacc tacatcacgg aaacggaaga tgtattttac acgtacaagg
1321gctctctggc ccctcaagac agcgattctg aagtttctca gaaccgaagc ccgcaccaag
1381agagtttatc cgagaacaat ccggcacaaa gctacctgac ccagaagtca tccagttctg
1441tgtctccatc ttcaaatgct ccaggctcct gctcacctga cggcgttgat cagcagctct
1501tagatgactt ccacagggtg accaaagggg gctccaccga ggacgccagc cagtactact
1561gtgacaagaa tgataatggt gacagctact tagtcttgat ccgtatcaca ccagatgaag
1621atggaaaatt tggatttaat cttaagggag gagtggatca aaagatgcct cttgtggtat
1681caaggataaa cccagagtca cctgcggaca cctgcattcc taagctgaac gaaggggatc
1741aaatcgtgtt aatcaatggc cgggacatct cagaacacac gcatgaccaa gtggtgatgt
1801tcatcaaagc cagccgggag tcccactcac gggagctggc cctggtgatc aggaggagag
1861ctgtccgctc atttgctgac ttcaagtctg aagatgaact gaaccagctt ttccccgaag
1921ccattttccc catgtgtccg gagggtgggg acactttgga gggatccatg gcacagctaa
1981agaagggcct cgaaagcggg acggtgctga tccagtttga gcaactctac agaaaaaagc
2041caggtttggc catcacgttt gcaaagctgc ctcaaaattt ggacaaaaac cgatataaag
2101atgtgctgcc ttatgacacc acccgggtat tattgcaggg aaatgaagat tatattaatg
2161caagttacgt gaacatggaa attcctgctg ctaaccttgt gaacaagtac atcgccactc
2221aggggcccct gccgcatacc tgtgcacagt tttggcaggt tgtctgggat cagaagttgt
2281cactcattgt catgttgacg actctcacag aacgagggcg gaccaaatgt caccagtact
2341ggccagatcc ccccgacgtc atgaaccacg gcggctttca catccagtgt cagtcagagg
2401actgcaccat cgcctatgtg tcccgagaaa tgctggtcac aaacacccag accggggaag
2461aacacacagt gacacatctc cagtacgtcg catggcctga ccacggtgtg cccgatgact
2521cctccgactt tctggaattt gtaaactatg tgaggtctct gagagtggac agcgagcccg
2581tcctagttca ctgcagtgct ggaataggtc gaaccggtgt gttggtcact atggaaacag
2641ccatgtgcct aactgagagg aacctgccca tttacccact ggatattgtc cgaaaaatgc
2701gagaccagcg cgccatgatg gtgcagacat caagccagta caagtttgtg tgtgaagcga
2761ttcttcgtgt gtatgaagaa ggtttagtcc aaatgctgga tccagtttgc caactttctt
2821gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt ctacgtagta
2881atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga tta

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