Transcript: Human XM_011518889.2

PREDICTED: Homo sapiens protein tyrosine phosphatase non-receptor type 3 (PTPN3), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTPN3 (5774)
Length:
7454
CDS:
853..3594

Additional Resources:

NCBI RefSeq record:
XM_011518889.2
NBCI Gene record:
PTPN3 (5774)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518889.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000320836 TGACACCACCCGGGTATTATT pLKO_005 2898 CDS 100% 15.000 21.000 N PTPN3 n/a
2 TRCN0000381524 CGCCTATGTGTCCCGAGAAAT pLKO_005 3195 CDS 100% 13.200 18.480 N PTPN3 n/a
3 TRCN0000320904 GTCGGTAAATAACCAATATTG pLKO_005 1854 CDS 100% 13.200 18.480 N PTPN3 n/a
4 TRCN0000010741 CCGGGTATTATTGCAGGGAAA pLKO.1 2907 CDS 100% 4.050 5.670 N PTPN3 n/a
5 TRCN0000320835 GTAGATAAGCATGCAATTATG pLKO_005 3769 3UTR 100% 13.200 10.560 N PTPN3 n/a
6 TRCN0000002786 CCGAGAAATGCTGGTCACAAA pLKO.1 3207 CDS 100% 4.950 3.960 N PTPN3 n/a
7 TRCN0000002789 CCTTTGTGAATACCGTGTTAA pLKO.1 4824 3UTR 100% 13.200 9.240 N PTPN3 n/a
8 TRCN0000002788 CGTGTGTATGAAGAAGGTTTA pLKO.1 3550 CDS 100% 10.800 7.560 N PTPN3 n/a
9 TRCN0000320833 CGTGTGTATGAAGAAGGTTTA pLKO_005 3550 CDS 100% 10.800 7.560 N PTPN3 n/a
10 TRCN0000002787 CCAAGAGAGTTTATCCGAGAA pLKO.1 2160 CDS 100% 4.050 2.835 N PTPN3 n/a
11 TRCN0000320903 CCAAGAGAGTTTATCCGAGAA pLKO_005 2160 CDS 100% 4.050 2.835 N PTPN3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518889.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13935 pDONR223 100% 99.9% 99.8% None 2736delT n/a
2 ccsbBroad304_13935 pLX_304 0% 99.9% 99.8% V5 (not translated due to frame shift) 2736delT n/a
3 TRCN0000467089 CCAGTTTAGAATTTATGGACCGAA pLX_317 16.7% 99.9% 99.8% V5 (not translated due to frame shift) 2736delT n/a
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