Construct: ORF ccsbBroad304_13954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013450.1_s304c1, BRDN0000403743
Derived from:
ccsbBroadEn_13954
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC4A2 (6522)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13954
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6522 SLC4A2 solute carrier family 4 mem... NM_001199694.2 93.6% 92.7% (many diffs)
2 human 6522 SLC4A2 solute carrier family 4 mem... NM_001199692.2 93.3% 93.3% 58_303del;1071T>C;2202G>A
3 human 6522 SLC4A2 solute carrier family 4 mem... NM_003040.4 93.3% 93.3% 58_303del;1071T>C;2202G>A
4 human 6522 SLC4A2 solute carrier family 4 mem... NM_001199693.1 93.2% 92.3% (many diffs)
5 human 6522 SLC4A2 solute carrier family 4 mem... XM_006716094.3 47% 46.4% (many diffs)
6 mouse 20535 Slc4a2 solute carrier family 4 (an... XM_006535656.3 81.6% 87.3% (many diffs)
7 mouse 20535 Slc4a2 solute carrier family 4 (an... NM_001253892.1 81.5% 87.7% (many diffs)
8 mouse 20535 Slc4a2 solute carrier family 4 (an... NM_009207.3 81.5% 87.7% (many diffs)
9 mouse 20535 Slc4a2 solute carrier family 4 (an... XM_006535650.1 81.5% 87.7% (many diffs)
10 mouse 20535 Slc4a2 solute carrier family 4 (an... XM_006535651.3 81.5% 87.7% (many diffs)
11 mouse 20535 Slc4a2 solute carrier family 4 (an... XM_006535655.3 81.3% 86.9% (many diffs)
12 mouse 20535 Slc4a2 solute carrier family 4 (an... XM_006535653.1 81.2% 87.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3543
ORF length:
3477
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cagcgcccct cggcgccccg ccaagggcgc agattctttc tgtacgccag
121agccaggacg gaagcctcga aggcgcccgg gagcctcccc gactggagaa accccgacca
181ttgaggaggg ggaggaagat gaggatgagg ccagcgaggc tgagggggcc cgggctctca
241ctcagccgtc ccctgtctcc acaccctcct cggtgcagtt ctttctccaa gaggatgaca
301gtgctgaccg gaaggcagag aggaccagtc catcttcccc tgcaccactg ccccaccagg
361aggcgactcc tcgggcctcc aaaggggccc aggctggaac ccaggtggag gaggcggagg
421cggaggcggt ggcggtggcc agtggcactg cagggggtga cgacgggggt gcctcggggc
481gccccctgcc caaagcccag cctgggcacc gcagctacaa ccttcaggag aggaggcgca
541tcgggagcat gactggggct gagcaggcac tgctgccccg ggtccccacg gatgagattg
601aggcccagac gctggccacg gccgacctag acctcatgaa gagtcaccgg tttgaggacg
661ttcctggggt gcggcggcac ttggtgcgga agaatgccaa aggttccaca cagagtggcc
721gagaagggcg ggagcctggc cccacacctc gggcccgacc ccgggccccc cacaagcccc
781atgaggtgtt tgtggagctg aatgagttgc tcctggacaa aaaccaggag ccccagtggc
841gggagacagc tcgctggatc aaatttgaag aggacgtgga ggaggagacc gagcgctggg
901ggaagcccca cgtggcctcc ctctccttcc gcagtctcct ggagctccgc aggaccctgg
961cccatggggc tgtgctcttg gatctggacc agcagaccct gcccggagtg gcccaccagg
1021tggtggagca gatggtcatc tctgaccaga tcaaggccga ggacagggcc aacgtgctgc
1081gggctctgct gttgaaacac agccacccaa gtgatgagaa ggacttctcc ttcccccgca
1141acatctcagc tggctccctg ggctccctgc tggggcatca ccatggtcag ggggctgaga
1201gtgaccccca cgtcaccgag cctctcatgg gaggtgttcc tgagacccgg ctggaggtgg
1261agcgagagcg tgagctgccg cctccagcac caccagctgg catcacccgc tccaagtcca
1321agcacgagct gaaactgctg gagaagattc ctgagaatgc cgaggccacg gtggtccttg
1381tgggctgcgt ggagttcctc tcccgcccca ccatggcctt tgtgcggctc cgggaggctg
1441tggagttgga cgcagtgttg gaggtgccgg tgcctgtgcg tttcctcttc ctgctgctgg
1501gcccgagtag tgccaacatg gactaccacg agatcggccg ctccatctcc accctcatgt
1561cagacaagca attccacgag gcagcctacc tggctgacga gcgggaggac ctgctgacgg
1621ccatcaacgc cttcctggac tgcagcgtgg tgctgccgcc ttcagaagtg cagggcgagg
1681agctgctgcg ctctgtggcc cacttccagc gccagatgct caagaagcga gaggagcagg
1741gccggctgct acctacaggg gctgggctgg agcccaaatc tgcccaagat aaggcgctcc
1801tgcagatggt agaggcggca ggggcagctg aagatgatcc ccttcggcgg acggggcggc
1861cctttggggg gctgatccga gatgtgcggc gccgctatcc ccactacctg agtgacttcc
1921gagatgcact tgaccctcag tgcctggccg cagtcatctt catctacttt gccgccctgt
1981ctcctgccat cacctttggg gggctgctgg gagagaagac acaggacctg ataggggtgt
2041cggagctgat tatgtccaca gcgctccagg gcgtggtctt ctgcctgctg ggtgcccagc
2101ccctgttggt gatcggcttc tcagggcccc tgctggtctt tgaggaggcc ttcttctcgt
2161tctgtagcag caaccacctg gagtacctgg tgggccgtgt gtggatcggc ttctggctgg
2221tgttcctggc cctgctcatg gtggccctgg aggggagctt cctggtccgc ttcgtctccc
2281gcttcaccca ggagatcttc gccttcttga tctcactcat cttcatctat gagaccttct
2341acaagctggt gaagatcttc caggagcacc ccctgcatgg ctgctcagcc tccaacagct
2401cagaggtgga cggcggtgag aacatgacat gggccggggc aagacccacg ctggggccgg
2461gcaacaggag cttggctggg cagtctgggc aggggaagcc ccggggccag cccaacacgg
2521ccctgctgtc gctggtgctc atggccggca ccttcttcat cgccttcttc ctgcgcaaat
2581tcaagaacag ccggttcttt cctggccgga tccggcgggt gattggggac tttggggtgc
2641ccatcgccat cctcatcatg gtgcttgtgg attacagtat tgaggacacc tatacccaga
2701agctgagcgt tcccagtgga ttctcggtga ctgccccaga aaagaggggc tgggtcatca
2761accccctggg agagaagagc cccttccctg tgtggatgat ggttgccagc ctgctgcccg
2821ccatcctggt cttcattctc atcttcatgg agacacagat caccacgctc atcatctcca
2881agaaggagcg catgctgcag aagggctccg gcttccacct ggacctgctg ctcatcgtgg
2941ccatgggcgg catctgtgcc ctctttggcc tgccctggtt ggctgctgcc actgtccgct
3001ctgtcactca cgccaacgcg ctcactgtca tgagcaaggc tgtggcacct ggggacaagc
3061ccaagattca ggaagtcaag gagcagcggg tgacggggct gctggttgcc ctgcttgtgg
3121gcctctccat agttatcggg gatctgctcc ggcagatccc cctggccgtg ctctttggaa
3181ttttcctgta catgggagtc acctccctta acgggatcca gttctatgag cggctgcatc
3241tgctgctcat gccgcccaaa caccacccag atgtcactta cgtcaagaag gtccggaccc
3301tccgtatgca cctgttcacg gccctgcagc tgctctgcct ggccctgctc tgggccgtca
3361tgtccacagc tgcctccctg gccttcccct tcatcctcat cctcacagtg ccgctccgca
3421tggtggtgct cacccgtatc ttcaccgacc gagagatgaa atgtctggat gctaacgagg
3481cagagccggt gtttgatgag cgggagggtg tggacgagta caatgagatg cccatgcctg
3541tgtacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
3601tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
3661tctggatta

Download FASTA (ORF) (Full)