Construct: ORF ccsbBroad304_14013

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017691.1_s304c1, BRDN0000409330
Derived from:
ccsbBroadEn_14013
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CLDN2 (9075)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14013
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9075 CLDN2 claudin 2 NM_001171092.1 99.8% 3.4% 13delG
2 human 9075 CLDN2 claudin 2 NM_001171095.1 99.8% 3.4% 13delG
3 human 9075 CLDN2 claudin 2 NM_020384.4 99.8% 3.4% 13delG
4 mouse 12738 Cldn2 claudin 2 NM_016675.4 86.9% 2.5% (many diffs)
5 mouse 12738 Cldn2 claudin 2 XM_006528490.3 86.9% 2.5% (many diffs)
6 mouse 12738 Cldn2 claudin 2 XM_006528486.3 77.7% 2.3% (many diffs)
7 mouse 12738 Cldn2 claudin 2 XM_006528487.3 77.7% 2.3% (many diffs)
8 mouse 12738 Cldn2 claudin 2 XM_006528488.2 77.7% 2.3% (many diffs)
9 mouse 12738 Cldn2 claudin 2 XM_006528489.3 77.7% 2.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
102
ORF length:
36
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ctctcttgcc tccaacttgt gggctacatc ctaggccttc tggggctttt
121gggcacactg gttgccatgc tgctccccag ctggaaaaca agttcttatg tcggtgccag
181cattgtgaca gcagttggct tctccaaggg cctctggatg gaatgtgcca cacacagcac
241aggcatcacc cagtgtgaca tctatagcac ccttctgggc ctgcccgctg acatccaggc
301tgcccaggcc atgatggtga catccagtgc aatctcctcc ctggcctgca ttatctctgt
361ggtgggcatg agatgcacag tcttctgcca ggaatcccga gccaaagaca gagtggcggt
421agcaggtgga gtctttttca tccttggagg cctcctggga ttcattcctg ttgcctggaa
481tcttcatggg atcctacggg acttctactc accactggtg cctgacagca tgaaatttga
541gattggagag gctctttact tgggcattat ttcttccctg ttctccctga tagctggaat
601catcctctgc ttttcctgct catcccagag aaatcgctcc aactactacg atgcctacca
661agcccaacct cttgccacaa ggagctctcc aaggcctggt caacctccca aagtcaagag
721tgagttcaat tcctacagcc tgacagggta tgtgtgccca actttcttgt acaaagtggt
781tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat gagctagcgc
841taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)