Construct: ORF ccsbBroad304_14075

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010401.1_s304c1, BRDN0000403860
Derived from:
ccsbBroadEn_14075
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KDM1A (23028)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14075
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23028 KDM1A lysine demethylase 1A NM_015013.4 85.6% 85.4% 1_366del;1214C>A;2370A>N
2 human 23028 KDM1A lysine demethylase 1A NM_001363654.2 85% 84.8% (many diffs)
3 human 23028 KDM1A lysine demethylase 1A XM_005245786.2 83.6% 83.4% (many diffs)
4 human 23028 KDM1A lysine demethylase 1A NM_001009999.3 83.2% 83.1% (many diffs)
5 human 23028 KDM1A lysine demethylase 1A XM_006710474.3 83% 82.9% (many diffs)
6 human 23028 KDM1A lysine demethylase 1A XM_017000717.1 78.7% 77.6% (many diffs)
7 human 23028 KDM1A lysine demethylase 1A XM_017000716.1 76.9% 75.9% (many diffs)
8 human 23028 KDM1A lysine demethylase 1A XM_006710473.3 76.3% 75.3% (many diffs)
9 mouse 99982 Kdm1a lysine (K)-specific demethy... NM_133872.2 77.9% 85.2% (many diffs)
10 mouse 99982 Kdm1a lysine (K)-specific demethy... XM_006539331.3 77.5% 84.8% (many diffs)
11 mouse 99982 Kdm1a lysine (K)-specific demethy... NM_001347221.1 76.2% 83.2% (many diffs)
12 mouse 99982 Kdm1a lysine (K)-specific demethy... XM_006539329.3 75.8% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2256
ORF length:
2190
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tgaaagcttg gccaacctct cagaagatga gtattattca gaagaagaga
121gaaatgccaa agcagagaag gaaaagaagc ttcccccacc accccctcaa gccccacctg
181aggaagaaaa tgaaagtgag cctgaagaac catcgggtgt ggagggcgca gctttccaga
241gccgacttcc tcatgaccgg atgacttctc aagaagcagc ctgttttcca gatattatca
301gtggaccaca acagacccag aaggtttttc ttttcattag aaaccgcaca ctgcagttgt
361ggttggataa tccaaagatt cagctgacat ttgaggctac tctccaacaa ttagaagcac
421cttataacag tgatactgtg cttgtccacc gagttcacag ttatttagag cgtcatggtc
481ttatcaactt cggcatctat aagaggataa aacccctacc aactaaaaag acaggaaagg
541taattattat aggctctggg gtctcaggct tggcagcagc tcgacagtta caaagttttg
601gaatggatgt cacacttttg gaagccaggg atcgtgtggg tggacgagtt gccacatttc
661gcaaaggaaa ctatgtagct gatcttggag ccatggtggt aacaggtctt ggagggaatc
721ctatggctgt ggtcagcaaa caagtaaata tggaactggc caagatcaag caaaaatgcc
781cactttatga agccaacgga caagctgttc ctaaagagaa agatgaaatg gtagagcaag
841agtttaaccg gttgctagaa gctacatctt accttagtca tcaactagac ttcaatgtcc
901tcaataataa gcatgtgtcc cttggccagg cattggaagt tgtcattcag ttacaagaga
961agcatgtcaa agatgagcag attgaacatt ggaagaagat agtgaaaact caggaagaat
1021tgaaagaact tcttaataag atggtaaatt tgaaagagaa aattaaagaa ctccatcagc
1081aatacaaaga agcatctgaa gtaaagccac ccagagatat tactgccgag ttcttagtga
1141aaagcaaaca cagggatctg accgccctat gcaaggaata tgatgaatta gctgaaacac
1201aaggaaagct agaagaaaaa cttcaggagt tggaagcgaa tcccccaagt gatgtatatc
1261tctcatcaag agacagacaa atacttgatt ggcattttgc aaatcttgaa tttgctaatg
1321ccacacctct ctcaactctc tcccttaagc actgggatca ggatgatgac tttgagttca
1381ctggcagcca cctgacagta aggaatggct actcgtgtgt gcctgtggct ttagcagaag
1441gcctagacat taaactgaat acagcagtgc gacaggttcg ctacacggct tcaggatgtg
1501aagtgatagc tgtgaatacc cgctccacga gtcaaacctt tatttataaa tgcgacgcag
1561ttctctgtac ccttcccctg ggtgtgctga agcagcagcc accagccgtt cagtttgtgc
1621cacctctccc tgagtggaaa acatctgcag tccaaaggat gggatttggc aaccttaaca
1681aggtggtgtt gtgttttgat cgggtgttct gggatccaag tgtcaatttg ttcgggcatg
1741ttggcagtac gactgccagc aggggtgagc tcttcctctt ctggaacctc tataaagctc
1801caatactgtt ggcactagtg gcaggagaag ctgctggtat catggaaaac ataagtgacg
1861atgtgattgt tggccgatgc ctggccattc tcaaagggat ttttggtagc agtgcagtac
1921ctcagcccaa agaaactgtg gtgtctcgtt ggcgtgctga tccctgggct cggggctctt
1981attcctatgt tgctgcagga tcatctggaa atgactatga tttaatggct cagccaatca
2041ctcctggccc ctcgattcca ggtgccccnc agccgattcc acgactcttc tttgcgggag
2101aacatacgat ccgtaactac ccagccacag tgcatggtgc tctgctgagt gggctgcgag
2161aagcgggaag aattgcagac cagtttttgg gggccatgta tacgctgcct cgccaggcca
2221caccaggtgt tcctgcacag cagtccccaa gcatgtgccc aactttcttg tacaaagtgg
2281ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
2341ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)