Construct: ORF ccsbBroad304_14239

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003203.1_s304c1, BRDN0000400652
Derived from:
ccsbBroadEn_14239
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CELF5 (60680)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14239
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60680 CELF5 CUGBP Elav-like family memb... NM_001172673.2 86.5% 70% (many diffs)
2 human 60680 CELF5 CUGBP Elav-like family memb... NM_021938.4 82.6% 68.3% (many diffs)
3 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722832.1 82.6% 68.3% (many diffs)
4 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722833.1 82.4% 68.1% (many diffs)
5 human 60680 CELF5 CUGBP Elav-like family memb... XR_001753733.1 66.7% (many diffs)
6 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722836.2 60.5% 45.9% (many diffs)
7 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722837.4 59.2% 45.6% (many diffs)
8 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722838.4 59.2% 45.6% (many diffs)
9 human 60680 CELF5 CUGBP Elav-like family memb... XM_011528173.1 59.2% 45.6% (many diffs)
10 human 60680 CELF5 CUGBP Elav-like family memb... XM_011528174.3 58.9% 45.4% (many diffs)
11 human 60680 CELF5 CUGBP Elav-like family memb... NR_033342.2 55.1% (many diffs)
12 human 60680 CELF5 CUGBP Elav-like family memb... XM_017027111.1 54% 40.6% (many diffs)
13 human 60680 CELF5 CUGBP Elav-like family memb... XR_430147.1 33.8% (many diffs)
14 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_176954.3 74.4% 65.3% (many diffs)
15 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311124.1 74.2% 65.1% (many diffs)
16 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_011243472.2 66.9% 58.6% (many diffs)
17 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513743.3 66.7% 58.4% (many diffs)
18 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311127.1 58.7% 49.4% (many diffs)
19 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311126.1 58.5% 49.2% (many diffs)
20 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513744.3 57.3% 45.4% (many diffs)
21 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513747.1 52.9% 44.5% (many diffs)
22 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513749.3 52.8% 44.3% (many diffs)
23 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513748.3 52.7% 44.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1272
ORF length:
1206
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ccgcctgacg gagagcgagg cgcgccggca gcagcagcag ctcctgcagc
121cgcggccctc gcccgtgggc agcagcgggc ccgagccccc cggggggcag cccgacggca
181tgaaggacct ggacgccatc aaactcttcg tgggccagat cccgcggcac ctggacgaga
241aggacctcaa gccgctcttg gagcagttcg gccgcatcta cgagctcacg gtgctcaaag
301acccctacac ggggatgcac aaaggctgtg ccttcctcac ctactgtgcc agggattccg
361ccatcaaagc tcagactgcc ctgcacgagc agaagacctt gcccggaatg gcgcggccaa
421tccaggtgaa gcctgcggac agtgaaagcc gcggaggtag ggaccggaag ctgttcgtgg
481ggatgctgaa caagcagcag tcggaggagg acgtgctgcg gctgttccag cccttcgggg
541tcattgacga gtgcacagtg ctccgggggc ctgacggcag cagcaaaggc tgtgctttcg
601tgaagttctc ctcccacacg gaggcgcagg cggccatcca cgccttgcat gggagccaga
661ccatgccggg agcctcctcc agcctggtgg tcaagttcgc cgacacggac aaggagcgga
721cgctccggcg catgcagcag atggtgggcc agctgggcat cctgacgccg tccctcacat
781tgcccttcag cccctacagt gcctacgccc aggctctcat gcaacagcag acaacagtcc
841tgtccacctc gggcagctac ctgagtcccg gcgtggcctt ctcaccctgt cacatccagc
901agataggcgc cgtcagcctc aacgggctgc ctgccacacc catcgctcct gcctctgggc
961tgcactcacc cccgctgctg ggcaccaccg ctgtgcctgg cctcgtggct cccatcacca
1021atggctttgc aggtgtcgtg cccctttcca ggtgggcacc ctgccctgga aaccgtctat
1081gccaatggcc ttgtgcccta cccagctcag agcccgactg tggccgagac actgcatcct
1141gccttctccg gagtccagca gtacacagcc atgtacccca ccgcggccat cacgcccatc
1201gcgcacagcg tcccccagcc gccgcccctc ctgcagcagc agcagcgaga aggagtttgg
1261agacacggag ctgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1321tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1381caatcaacct ctggatta

Download FASTA (ORF) (Full)