Transcript: Mouse NM_001311124.1

Mus musculus CUGBP, Elav-like family member 5 (Celf5), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-25
Taxon:
Mus musculus (mouse)
Gene:
Celf5 (319586)
Length:
4404
CDS:
105..1289

Additional Resources:

NCBI RefSeq record:
NM_001311124.1
NBCI Gene record:
Celf5 (319586)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001311124.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247427 AGTTTGCCGACACGGATAAAG pLKO_005 616 CDS 100% 13.200 9.240 N Celf5 n/a
2 TRCN0000247426 CTACAATGAATTTCGTGAAAT pLKO_005 4161 3UTR 100% 13.200 9.240 N Celf5 n/a
3 TRCN0000247428 TCATCTCCTCCAAGGTGTTTA pLKO_005 1220 CDS 100% 13.200 9.240 N Celf5 n/a
4 TRCN0000247429 AGCAGTACACAGCCATGTATC pLKO_005 1078 CDS 100% 10.800 7.560 N Celf5 n/a
5 TRCN0000247425 GATTGGTGCCGTCAGCCTTAA pLKO_005 824 CDS 100% 10.800 7.560 N Celf5 n/a
6 TRCN0000074432 TCCTCCAAGGTGTTTATGGAT pLKO.1 1225 CDS 100% 3.000 2.100 N CELF5 n/a
7 TRCN0000429984 AGTTTGGAGACACGGAGCTGA pLKO_005 1172 CDS 100% 2.640 1.848 N CELF5 n/a
8 TRCN0000433706 AGTCCAGCAGTACACAGCCAT pLKO_005 1073 CDS 100% 2.640 1.584 N CELF5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001311124.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14239 pDONR223 100% 74.2% 65.1% None (many diffs) n/a
2 ccsbBroad304_14239 pLX_304 0% 74.2% 65.1% V5 (many diffs) n/a
3 TRCN0000465239 CTTAGCCTAGCTGATTATTTGTTA pLX_317 26.8% 74.2% 65.1% V5 (many diffs) n/a
4 ccsbBroadEn_08804 pDONR223 100% 72.7% 69.7% None (many diffs) n/a
5 ccsbBroad304_08804 pLX_304 0% 72.7% 69.7% V5 (many diffs) n/a
6 TRCN0000470282 TAGTGTCAACTCCATCTTCCCAAA pLX_317 21.8% 72.7% 69.7% V5 (many diffs) n/a
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