Construct: ORF ccsbBroad304_14278

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014141.1_s304c1, BRDN0000404199
Derived from:
ccsbBroadEn_14278
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM156 (80008)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14278
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80008 TMEM156 transmembrane protein 156 NM_024943.3 99.6% 98.3% 313T>C;603A>G;876delA
2 human 80008 TMEM156 transmembrane protein 156 NM_001303228.2 99.3% 97.9% (many diffs)
3 human 80008 TMEM156 transmembrane protein 156 XM_024454222.1 95.4% 88.9% (many diffs)
4 human 80008 TMEM156 transmembrane protein 156 XM_024454223.1 95% 90.1% (many diffs)
5 human 80008 TMEM156 transmembrane protein 156 XM_024454224.1 93.3% 92.5% (many diffs)
6 human 80008 TMEM156 transmembrane protein 156 XM_011513753.2 90.3% 89.1% 272_273ins84;519A>G;792delA
7 human 80008 TMEM156 transmembrane protein 156 XM_011513754.2 76% 74.6% (many diffs)
8 human 80008 TMEM156 transmembrane protein 156 XM_017008629.1 76% 74.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
954
ORF length:
888
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac aaaaacagcc ctccttaaat tatttgtggc aatagtgatc acattcattt
121taattttgcc ggaatatttc aagacaccga aagaaagaac attggagcta tcatgtctgg
181aagtgtgttt gcaatctaat tttacctatt cactctcctc cttaaatttt tcttttgtga
241cttttctgca accagtaagg gaaactcaga ttatcatgag aatctttcta aatccctcca
301attttcgtaa cttcaccagg acttgccaag acatcacagg tgaatttaaa atgtgctcct
361cgtgtttggt ttgtgagcct aaaggaaaca tggattttat ttctcaggaa caaacatcaa
421aagttcttat caggagagga tcaatggaag tgaaagcaaa tgattttcat tcaccttgtc
481agcactttaa cttcagtgta gctcctctgg ttgaccactt ggaggaatat aacactacct
541gtcatctaaa aaaccacact ggaagatcaa caatcatgga ggatgagcca agcaaggaga
601aatcgataaa ctacacttgt agaatcatgg aatacccgaa tgattgtata cacatttctt
661tgcacctgga gatggatata aaaaatatca cttgttccat gaagatcact tggtatattt
721tagttctatt agtttttata tttttgatca tcctcactat ccgcaaaata cttgaaggcc
781agagaagagt gcaaaagtgg cagagtcata gagacaaacc tacatctgtt ctcttaagag
841gaagtgattc ggagaaactg agagcattga atgtgcaggt tctttcagca gagaccacgc
901agaggctgcc tttggatcaa gtccaggaag tgcttccccc attccagaac tatacccaac
961tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc tcgattctac
1021gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)