Construct: ORF ccsbBroad304_14282

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004947.1_s304c1, BRDN0000462215
Derived from:
ccsbBroadEn_14282
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CFAP43 (80217)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14282
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80217 CFAP43 cilia and flagella associat... XM_017016684.1 99.8% 6.9% 81C>T;196G>T;2730G>A
2 human 80217 CFAP43 cilia and flagella associat... XM_011540201.2 61.4% 4.2% (many diffs)
3 human 80217 CFAP43 cilia and flagella associat... XM_011540200.2 60.9% 4.2% (many diffs)
4 human 80217 CFAP43 cilia and flagella associat... XM_005270172.3 57.2% 3.9% (many diffs)
5 human 80217 CFAP43 cilia and flagella associat... XM_005270171.2 56.3% 3.9% (many diffs)
6 human 80217 CFAP43 cilia and flagella associat... NM_025145.6 56.2% 3.9% (many diffs)
7 human 80217 CFAP43 cilia and flagella associat... XM_011540197.2 56% 3.8% (many diffs)
8 human 80217 CFAP43 cilia and flagella associat... XM_011540199.2 55.2% 3.9% (many diffs)
9 human 80217 CFAP43 cilia and flagella associat... XM_011540196.2 55% 3.8% (many diffs)
10 human 80217 CFAP43 cilia and flagella associat... XM_017016681.1 54.9% 3.8% (many diffs)
11 human 80217 CFAP43 cilia and flagella associat... XM_017016682.1 54.1% 4% (many diffs)
12 human 80217 CFAP43 cilia and flagella associat... XM_011540198.2 52.7% 3.9% (many diffs)
13 human 80217 CFAP43 cilia and flagella associat... XM_011540202.2 40% 1.1% (many diffs)
14 human 80217 CFAP43 cilia and flagella associat... XR_002957015.1 33.5% (many diffs)
15 human 80217 CFAP43 cilia and flagella associat... XM_024448177.1 23.5% 1.1% (many diffs)
16 human 80217 CFAP43 cilia and flagella associat... XM_024448178.1 11.7% 1.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
264
ORF length:
195
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgcaaggc cgggagcgcg acgaaggccc ccactccgcc ggcggcgcgt
121ccttgtccgt gagatgggtg caaggatttc ctaagcagaa tgttcatttt gtcaacgaca
181acaccatttg ctacccttgt gggaattatg taatatttat taatattgaa accaagaaaa
241agactgtact gcagtgtagt aattgaattg tgggcgtcat ggcaactaac atcccctgtg
301aagttgtggc tttttctgac cggaagctaa aacctctcat ctacgtatac agctttccag
361gattgaccag aaggaccaaa ttgaaaggca acattctcct ggactacact ttactttcat
421tcagttactg tggcacctac ctggctagtt actcctctct cccagaattt gaactggccc
481tttggaactg ggaatcgagt atcattttgt gtaagaaatc acagcctgga atggatgtga
541accaaatgtc ttttaacccc atgaactggc gccagctgtg cttatcaagt ccaagtacag
601tgagcgtgtg gaccattgaa agaagtaacc aggagcattg tttcagagca aggtcggtga
661aattacctct agaagatggg tcatttttta atgaaacgga tgtcgttttc ccccagtcgt
721tgccgaaaga tctcatctat ggtcccgtgc tgccactgtc agccattgcc gggctggtag
781gcaaagaggc agagactttc cggccgaaag atgatctata tcctttgctt cacccgacta
841tgcattgctg gactccaaca agtgacttgt acattggctg tgaagagggt catcttttaa
901tgattaatgg agacaccttg caagtgactg tacttaataa gatagaagag gaatcgccat
961tggaagacag aagaaatttt atcagtccag taaccttggt atatcagaag gagggcgtgc
1021tggcttctgg aattgatggc tttgtgtatt cttttattat taaagataga agttacatga
1081tcgaggattt tcttgagatt gaaagacctg tagaacatat gacattttct cccaattata
1141cagtgttgct gattcaaaca gacaagggat ctgtttatat ctacactttt ggtaaggagc
1201caaccttaaa taaagtccta gatgcttgtg atgggaaatt tcaggcaatt gactttatca
1261cacctggaac ccaatacttc atgacactta catattcagg ggaaatttgt gtttggtggc
1321tggaggattg tgcttgtgta agcaagattt atctgaatac cctagcaacg gttctggctt
1381gctgtccatc ctccctctct gcagccgtgg gcacggagga tggctcggtc tacttcatca
1441gcgtatatga taaggaatcc cctcaggtcg tgcacaaggc ctttctctcg gaatcgtccg
1501tgcagcacgt cgtttatgat cagcaaggaa tatttctgtt agttggaaca gcagaaggaa
1561aagtctttat tatcaatgcc aactcctcaa gctcatttca gattattgga ttcacagagg
1621tggccaaaga cattttacag atatccacag tgtctctttt agaaacagac atagtggaag
1681tgatggtgct ttcctcgctt ccagaagcag ggagaagcag gttggagatg ttcacactgc
1741ctacattact gccacaagtt tccacaacct ttgctgatga aagaggaagg ctgaaagatg
1801aaatcattca taagtacctg tatgagttgg agcacgctct gtcctctgca gtcttgggct
1861ttcaaagtaa ccaaatatat ggcttctgta gtcaagtgcc atacatctgt agctaccttc
1921ttcctgaaga agaacatacc ggtatctaca ttcttaaacc atacaaaaaa gtacaaagca
1981gacagtatgg acctggactg ctctatctgt cttcacatgg attgtggctc ataacaatag
2041ctaaatgtgg aattctgtgt atccgagacg tttatacttt ggaaacattt gcttggtgtc
2101ggagtcattc tcaccagggt catgggattc agtcaatgag aatttcaatg gatggacaaa
2161acattctggt gaatgggaga gatgatggca cccttgtcta cctaaagtgg aagcgatttg
2221gaggacacct agccagtgaa attctggact attaccagaa actattaatt tccctgagca
2281gcgccatgga caaggagaat cattatttaa gcacaacacc aaaagtttcc gtagatttgg
2341gatccgattc tgaacacaca aaacagaagg caagcactga cttatcacaa gatgaattag
2401ttctaaccga tgttaagaag gaaattcctt ggatacaaca aaaaagccaa gaggccatca
2461aaaaggaggt taatctgttt tccaagaaaa ggaaagagat aaaacaagga atcaaatcac
2521tttccaaaac tattctgaat atgatggaag aaaatgacaa actagaaaat attgcaaaat
2581tagaccaaca ggaatttggt ctggatcttg aggaactaga aaggcttcat gatgaaagtc
2641aggaagaagt ggcaaagatg ataaaggatg tagagatgca taacttagcc aagagctatt
2701tggctgaact tatcaaagaa gaatgttgga attcgatggc tgtgaaaggt cgagctctta
2761agtgttttca tatcccctgt gtggttgaaa acttcccaat gaaagcgcgc acggttgaag
2821agctgaaaga attggaaaga gttttacagc aaaagaagat tgaagcagag tgtcttaaag
2881tactattttt gccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
2941tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
3001tcaacctctg gatta

Download FASTA (ORF) (Full)