Construct: ORF ccsbBroad304_14956

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018957.1_s304c1, BRDN0000459441
Derived from:
ccsbBroadEn_14956
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
LRPPRC (10128)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14956
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10128 LRPPRC leucine rich pentatricopept... NM_133259.4 99.5% 15.3% (many diffs)
2 human 10128 LRPPRC leucine rich pentatricopept... XM_011532473.1 97.7% 15.6% (many diffs)
3 human 10128 LRPPRC leucine rich pentatricopept... XM_006711915.2 96.5% 12.4% (many diffs)
4 human 10128 LRPPRC leucine rich pentatricopept... XM_017003117.1 94.7% 12.6% (many diffs)
5 human 10128 LRPPRC leucine rich pentatricopept... XM_006711916.3 75% 20.3% (many diffs)
6 human 10128 LRPPRC leucine rich pentatricopept... XR_002958896.1 61.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
744
ORF length:
675
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcagccctg ctgagatccg cgcgttggtt gctgcgtgcc ggggcggccc
121cgcgcctccc gctctccctg cgcctcctcc ctggcggccc gggccggctg catgccgcct
181cctatctgcc cgccgctcgc gccgggcccg tggccggagg actactgagc ccagccaggc
241tgtatgccat tgctgccaaa gaaaaagata ttcaagagga gtccactttt tcttctagga
301agatttccaa tcaatttgat tgggctctaa tgagactaga tctttctgtt cgaagaactg
361gccgcattcc aaagaagctt ctacaaaaag tttttaatga tacctgccgc tcaggtggcc
421taggtggtag tcatgccttg cttctactac gtagttgtgg ttctctcttg cctgaactaa
481agcttgaaga gagaacagaa tttgctcata ggatatggga cacacttcag aaattaggtg
541ctgtgtatga tgtgagtcac tataatgctt tacttaaagt ctatcttcaa aatgaatata
601aattctcacc aactgatttc ctggcaaaaa tggaggaagc aaacattcaa ccaaatcgag
661tgacatacca gagattgatt gcttcttatt gtaatgtagg agatattgaa aggtgccagc
721aagattcttg gatttatgaa aactaaagga tctcccagtt acagaggcag tattcagtgc
781ccttgtgaca gggcatgcca agagctggtg ataatggaga atgcagaaaa acagtgatga
841gagatgccgg aattgagcct ggtccagaca catacctcgc attattgaat gcatatgctg
901agaagggcga cattgaccat gttaagcaga ctctggagaa ggtggagaag tccgagcttc
961accttatgga ccgtgattta ctgcaaatta tttttagctt cagtaaagct gggtatcctc
1021agtatgtctc agaaattttg gaaaaagtta catgtgaaag aagatatatt ccagatgcaa
1081tgaacctcat tttactttta gtcactgaaa aattggaaga tgtagcgttg caaattttac
1141tagcatgccc cgtatcaaag gaagatggcc caagtgtctt tggcagtttc tttttacaac
1201actgtgtgac tatgaatacg cctgtggaga agctaacaga ctactgtaag aagttaaagg
1261aagtccagat gcactccttt cctctgcagt tcaccctcca ttgtgcttta ctcgccaata
1321aaactgattt ggcaaaagcc ttaatgaagg ctgtgaagga ggaaggtttt cctatcagac
1381ctcactattt ctggccattg ctagttggac gtcggaagga aaaaaatgtt caaggtataa
1441ttgaaatcct caaaggaatg caagaattgg gagtacatcc tgatcaggaa acatatacag
1501attatgtgat tccatgcttt gatagtgtaa actcagcacg agccattttg caggaaaatg
1561gatgtctgtc tgatagtgat atgttttctc aagctggatt gagaagtgaa gcagcaaatg
1621ggaacttaga ctttgtatta tcatttttga aatcaaatac attgcccatc tcgctgcagt
1681ctataagaag tagcctactg ctaggcttca ggaggtctat gaatataaat ctttggagcg
1741agataacaga attgttgtac aaggatggac gttattgcca ggagcctcga ggaccgacgg
1801aagctgttgg ctattttctt tataacttga ttgacagcat gagtgactca gaagtacagg
1861ccaaggagga gcatttgaga caatacttcc atcagctgga gaagatgaat gtaaaaattc
1921ctgaaaatat ctacagaggc attcgtaatc tcctggaaag ctaccatgtt cctgaattga
1981ttaaggatgc tcacttgttg gttgagagta agaatttaga ctttcaaaaa actgtgcaac
2041ttacatcatc tgaattggag tccacacttg aaacactaaa agctgaaaat caacctataa
2101gagatgtcct aaagcaactc atattagtgc tttgttcaga agagaatatg caaaaagccc
2161ttgaattgaa agcaaaatat gaatccgaca tggttactgg tggctatgca gctttaataa
2221atttatgctg tcgacatgat aaagtagaag atgccttgaa cttgaaagaa gaatttgacc
2281gcttagattc atctgctgtc cttgacaccg gcaagtatgt aggccttgta agagtattgg
2341caaagcatgg caagctccaa gatgctatta acattctgaa ggagatgaaa gagaaggatg
2401ttcttatcaa agatacaaca gccttgtcct ttttccacat gctaaatggc gcagctttaa
2461gaggtgaaat tgaaacagta aaacagttgc atgaagccat cgtgactcta gggttagcag
2521aaccatccac caacataagt ttcccattgg tcactgtaca cttggaaaag ggcgacctat
2581ctactgctct tgaggtcgcc attgactgct atgaaaagta taaagtatta ccaaggattc
2641atgatgtctt gtgtaaactg gtagagaaag gcgagactga tctaattcag aaagcaatgg
2701actttgtgag ccaagaacaa ggtgaaatgg tgatgctcta tgatctcttc tttgccttcc
2761tacaaacagg aaattacaaa gaggccaaga agatcattga gactccaggg attagagctc
2821gatctgcaag gcttcagtgg ttttgtgaca gatgtgttgc aaataatcag gttgaaactc
2881tggaaaaatt agtggagctg acacagaagc tatttgaatg tgatagagac cagatgtact
2941acaatctgct aaaactgtat aaaataaacg gtgactggca aagagctgat gcagtctgga
3001ataaaatcca agaagaaaat gttattcctc gtgaaaagac attaagatta ttagcagaaa
3061tccttagaga gggtaaccag gaagttccgt ttgacgtacc tgagttgtgg tatgaagatg
3121aaaaacattc cctgaattct tcgtcagcct caaccacaga acctgatttc cagaaagata
3181tattgattgc ctgccgattg aaccaaaaaa aaggggcata tgatattttc ctgaatgcaa
3241aagagcaaaa cattgtgttt aatgctgaaa cctacagcaa tctcattaaa ttactgatgt
3301cagaagatta ttttacacaa gcaatggaag tgaaagcatt cgcggagacc cacatcaagg
3361gcttcacact gaacgatgct gccaacagcc gcctcatcat aacgcaagtt aggcgggatt
3421atttgaaaga ggctgtgaca acactgaaaa cagtattgga tcagcagcag acccgttcta
3481ggttagccag tgacccgtgg tcatccaggc attgggccat gaaagggtga tgttgaaaac
3541atagaagtag ttcagaagat gttaaatgga ctcgaagact ccattggact tcaaaaatgg
3601ttttcatcaa taacattgct ttggctcaaa taaagaataa taacatagat gccgcaatag
3661aaaacattga aaatatgctt acttcagaga ataaagtcat tgaaccccaa tacttcggct
3721tggcatactt attcagaaaa gtaatagagg agcagttgga accagcagtt gaaaagataa
3781gcatcatggc ggagagattg gccaatcagt ttgcaattta taaacctgtc actgattttt
3841tccttcaact tgtggatgca ggcaaggtgg atgatgccag agctctccta cagagatgtg
3901gtgcaattgc tgaacaaacc ccgattttgt tgttgttcct ccttaggaat tctaggaaac
3961aaggaaaggc atcaactgtg aaatctgtgt tagaattgat tcctgaatta aatgaaaagg
4021aagaagcata caattccctc atgaaaagct atgtctcaga gaaagatgtc acatctgcta
4081aagcactgta tgaacatttg actgcaaaga atacaaaatt ggatgatctg tttctaaagc
4141gttacgcatc tttgctgaag tatgctggag agcctgtccc tttcattgaa ccccctgaaa
4201gctttgaatt ttatgcacag cagctaagaa aattGAGGGA AAACTCTTCT TTGCCAACTT
4261TCTTGTACaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
4321agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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