Construct: ORF ccsbBroad304_15010

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001966.1_s304c1, BRDN0000407671
Derived from:
ccsbBroadEn_15010
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRTC1 (23373)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15010
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23373 CRTC1 CREB regulated transcriptio... NM_015321.3 74.6% 74.4% (many diffs)
2 human 23373 CRTC1 CREB regulated transcriptio... NM_001098482.2 72.8% 72.6% (many diffs)
3 human 23373 CRTC1 CREB regulated transcriptio... XM_005259834.1 70% 69.8% (many diffs)
4 human 23373 CRTC1 CREB regulated transcriptio... XM_005259833.3 68.3% 68.1% (many diffs)
5 human 23373 CRTC1 CREB regulated transcriptio... XM_011527842.3 67.4% 67.2% (many diffs)
6 human 23373 CRTC1 CREB regulated transcriptio... XM_017026536.1 62.3% 62.1% (many diffs)
7 human 23373 CRTC1 CREB regulated transcriptio... XM_005259835.3 59.6% 59.5% (many diffs)
8 human 23373 CRTC1 CREB regulated transcriptio... XM_005259836.3 54.3% 54.1% (many diffs)
9 human 23373 CRTC1 CREB regulated transcriptio... XM_024451434.1 52.9% 52.8% (many diffs)
10 human 23373 CRTC1 CREB regulated transcriptio... XM_006722710.3 51.6% 51.5% (many diffs)
11 human 23373 CRTC1 CREB regulated transcriptio... XM_017026537.1 49.8% 48.4% (many diffs)
12 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242313.2 78.8% 82.1% (many diffs)
13 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509704.2 78.5% 82.2% (many diffs)
14 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242312.2 77.1% 77.2% (many diffs)
15 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509700.3 66.5% 69.3% (many diffs)
16 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242310.2 63.7% 66.4% (many diffs)
17 mouse 382056 Crtc1 CREB regulated transcriptio... NM_001004062.2 62.5% 65.1% (many diffs)
18 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242311.2 59.9% 62.5% (many diffs)
19 mouse 382056 Crtc1 CREB regulated transcriptio... XM_006509699.3 58.2% 60.9% (many diffs)
20 mouse 382056 Crtc1 CREB regulated transcriptio... XM_011242309.2 55.9% 58.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1491
ORF length:
1425
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac gcccacgcag ccaccatcct ttagcagtgg gtcccaggac gtgcaccaga
121aaagagtctt actgttaaca gtcccaggaa tggaagagac cacatcagag gcagacaaaa
181acctttccaa gcaagcatgg gacaccaaga agacggggtc caggcccaag tcctgtgagg
241tccccggaat caacatcttc ccgtctgccg accaggaaaa cactacagcc ctgatccccg
301ccacccacaa cacagggggg tccctgcccg acctgaccaa catccacttc ccctccccgc
361tcccgacccc gctggacccc gaggagccca ccttccctgc actgagcagc tccagcagca
421ccggcaacct cgcggccaac ctgacgcacc tgggcatcgg tggcgccggc cagggaatga
481gcacacctgg ctcctctcca cagcaccgcc cagctggcgt cagccccctg tccctgagca
541cagaggcaag gcgtcagcag gcatcgcccg ccctgtcccc gctgtcaccc atcactcagg
601ctgtagccat ggacgccctg tctctggagc agcagctgcc ctacgccttc ttcacccagg
661cgggctccca gcagccaccg ccgcagcccc agcccccgcc gcctcctcca cccgcgtcca
721cgcagccacc acccccgcca cccccacagg cgcccgtccg cctgccccct ggtggccccc
781tgttgcccag cgccagcctg actcgtgggc cacagccgcc cccgcttgca gtcacggtac
841cgtcctctct cccccagtcc cccccagaga accctggcca gccatcgatg gggatcgaca
901tcgcctcggc gccggctctg cagcagtacc gcactagcgc cggctccccg gccaaccagt
961ctcccacctc gccagtctcc aatcaaggct tctccccagg gagctccccg caacacactt
1021ccaccctggg cagcgtgttt ggggacgcgt actatgagca gcagatggcg gccaggcagg
1081ccaatgctct gtcccaccag ctggagcagt tcaacatgat ggagaacgcc atcagctcca
1141gcagcctgta cagcccgggc tccacactca actactcgca ggcggccatg atgggcctca
1201cgggcagcca cgggagcctg ccggactcgc agcaactggg atacgccagc cacagtggca
1261tccccaacat catcctcaca gtgacaggag agtccccccc cagcctctct aaagaactga
1321ccagctctct ggccggggtc ggcgacgtca gcttcgactc cgacagccag tttcccctgg
1381acgaactcaa gatcgacccc ctgaccctcg acggactgca catgctcaac gaccccgaca
1441tggttctggc cgacccagcc accgaggaca ccttccggat ggaccgcctg tgcccaactt
1501tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1561agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)