Construct: ORF ccsbBroad304_15044

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018976.1_s304c1, BRDN0000459459
Derived from:
ccsbBroadEn_15044
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
RPS6KA3 (6197)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15044
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 NM_014496.5 91% 28% (many diffs)
2 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 NM_001330512.1 87.9% 24.2% (many diffs)
3 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530917.2 87.9% 24.2% (many diffs)
4 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029423.2 86.2% 23.6% (many diffs)
5 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029424.1 86.2% 23.6% (many diffs)
6 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029425.1 86.2% 23.6% (many diffs)
7 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530919.2 77.6% 14.2% (many diffs)
8 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530920.2 75.2% 11.8% (many diffs)
9 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029426.1 59.8% 11.8% (many diffs)
10 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_011247707.2 79.4% 23% (many diffs)
11 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528404.2 77% 24.1% (many diffs)
12 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528403.2 71.8% 22.4% (many diffs)
13 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... NM_025949.3 70.1% 21.9% (many diffs)
14 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528400.3 70.1% 21.9% (many diffs)
15 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528401.3 70.1% 21.9% (many diffs)
16 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528402.2 69.7% 22% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
705
ORF length:
639
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct accattcgct cctcaggacg agccctggga ccgagaaatg gaagtgttca
121gcggcggcgg cgcgagcagc ggcgaggtaa atggtcttaa aatggttgat gagccaatgg
181aagagggaga agcagattct tgtcatgatg aaggagttgt taaagaaatc cctattactc
241atcatgttaa ggaaggctat gagaaagcag atcctgcaca gtttgagttg ctcaaggttc
301ttggtcaggg gtcatttgga aaggtttttc ttgttagaaa gaagaccggt cctgatgctg
361ggcagctcta tgcaatgaag gtgttaaaaa aagcctcttt aaaagttcga gacagagttc
421ggacaaagat ggagagggat atactggtgg aagtaaatca tccatttatt gtcaaattgc
481actatgcctt tcagactgaa gggaaactgt acttaatact ggattttctc aggggaggag
541atgttttcac aagattatcc aaagaggttc tgtttacaga ggaagatgtg aaattctacc
601tcgcagaact ggcccttgct ttggatcatc tgcaccaatt aggaattgtt tatagagacc
661tgaagccaga aaacattttg cttgatgaaa tagacatatc aaattaacag attttggact
721cagcaaggag tcagtagatc aagaaaagaa gcttactcat tttgtggtac agtagagtat
781atggctcctg aagtagtaaa taggagagca tcccagagtg ctgatggtgt tcatatggtg
841ttcttatgtt tgaatgctta ctggtactct gccatttcaa ggtaaagaca gaaatgagac
901aatgactatg attcttaaag ccaaacttgg aatgccacag tttttgagtc ctgaagcgca
961gagtctttta cgaatgcttt tcaagcgaaa tcctgcaaac agattaggtg caggaccaga
1021tggagttgaa gaaattaaaa gacattcatt tttctcaacg atagactgga ataaactgta
1081tagaagagaa attcatccgc catttaaacc tgcaacgggc aggcctgaag atacattcta
1141ttttgatcct gagtttactg caaaaactcc caaagattca cctggcattc cacctagtgc
1201taatgcacat cagctttttc gggggtttag ttttgttgct attacctcag atgatgaaag
1261ccaagctatg cagacagttg gtgtacattc aattgttcag cagttacaca ggaacagtat
1321tcagtttact gatggatatg aagtaaaaga agatattgga gttggctcct actctgtttg
1381caagagatgt atacataaag ctacaaacat ggagtttgca gtgaagatta ttgataaaag
1441caagagagac ccaacagaag aaattgaaat tcttctgcgc tatggacaac atccccaacc
1501atttttatac tttgaggatt ctttgatgat ggtagatatg tttacctgta cnggattaat
1561ggaaaggagg agagttactt gaccgtattc tcaacaaaaa atgttttctc gaacggaggg
1621ctagtgatat actatatgta ataagtaaga cagtgnacta tcttcattgt caaggagttg
1681ttcatcgtga tcttaaacnt agtaatatnt tatacatgga tgaatcagcc agtgcagatt
1741caatcaggat atgtgatttt gggtttgcaa aacaacttcg aggagaaaat ggacttctct
1801taactccatg ctacactgca aactttgttg cacctgaggt tcttatgcaa cagggatatg
1861atgctgcttg tgatatctgg agtttaggag tcctttttta cacaatgttg gctggctaca
1921ctccatttgc taatggcccc aatgatactc ctgaagagat actgctgcgt ataggcaatg
1981gaaaattctc tttgagtggt ggaaactggg acaatatttc agacggagca aaggatttgc
2041tttcccatat gcttcatatg gacccacatc agcggtatac tgctgaacaa atattaaagc
2101actcatggat aactcacaga gaccagttgc caaatgatca gccaaagaga aatgatgtgt
2161cacatgttgt taagggagca atggttgcaa catactctgc cctgactcac aagacctttc
2221aaccagtcct agagcctgta gctgcttcaa gcttagccca gcgacggagc atgaaaaagc
2281gaacatcaac tggcctgttg ccaactttct tgtacaaagt ggttggtaag cctatcccta
2341accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
2401agtcgacaat caacctctgg atta

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