Construct: ORF ccsbBroad304_15193

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006513.2_s304c1, BRDN0000459740
Derived from:
ccsbBroadEn_15193
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAMKK1 (84254)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15193
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84254 CAMKK1 calcium/calmodulin dependen... NM_172207.2 99.8% 99.8% 1170A>G;1238A>G
2 human 84254 CAMKK1 calcium/calmodulin dependen... XM_005256817.1 95.6% 95.5% 1170A>G;1238A>G;1561_1629del
3 human 84254 CAMKK1 calcium/calmodulin dependen... XM_006721588.3 95.6% 95.5% 1170A>G;1238A>G;1561_1629del
4 human 84254 CAMKK1 calcium/calmodulin dependen... XM_011524031.3 94.9% 94.8% 1_81del;1251A>G;1319A>G
5 human 84254 CAMKK1 calcium/calmodulin dependen... XM_024450996.1 91.1% 91% (many diffs)
6 human 84254 CAMKK1 calcium/calmodulin dependen... NM_032294.3 88.6% 88.5% (many diffs)
7 human 84254 CAMKK1 calcium/calmodulin dependen... XM_017025220.2 88.6% 88.5% (many diffs)
8 human 84254 CAMKK1 calcium/calmodulin dependen... NM_172206.2 84.4% 84.3% (many diffs)
9 human 84254 CAMKK1 calcium/calmodulin dependen... XR_001752661.2 72.9% (many diffs)
10 human 84254 CAMKK1 calcium/calmodulin dependen... XM_024450997.1 50.4% 47% (many diffs)
11 human 84254 CAMKK1 calcium/calmodulin dependen... XM_011524032.3 50% 50% 1_81del;903_904ins738
12 human 84254 CAMKK1 calcium/calmodulin dependen... XM_011524033.1 44.8% 44.7% (many diffs)
13 human 84254 CAMKK1 calcium/calmodulin dependen... XM_011524035.3 44.8% 44.7% (many diffs)
14 human 84254 CAMKK1 calcium/calmodulin dependen... XM_024450998.1 44.8% 44.7% (many diffs)
15 human 84254 CAMKK1 calcium/calmodulin dependen... XM_024450999.1 44.8% 44.7% (many diffs)
16 human 84254 CAMKK1 calcium/calmodulin dependen... XR_001752662.2 37.5% (many diffs)
17 mouse 55984 Camkk1 calcium/calmodulin-dependen... NM_018883.2 78.9% 82.8% (many diffs)
18 mouse 55984 Camkk1 calcium/calmodulin-dependen... XM_006533760.3 78.9% 82.8% (many diffs)
19 mouse 55984 Camkk1 calcium/calmodulin-dependen... XM_006533761.3 78.9% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1626
ORF length:
1560
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggggggtcca gctgtctgct gccaggatcc tcgggcagag ctggtagaac
121gggtggcagc catcgatgtg actcacttgg aggaggcaga tggtggccca gagcctacta
181gaaacggtgt ggacccccca ccacgggcca gagctgcctc tgtgatccct ggcagtactt
241caagactgct cccagcccgg cctagcctct cagccaggaa gctttcccta caggagcggc
301cagcaggaag ctatctggag gcgcaggctg ggccttatgc cacggggcct gccagccaca
361tctccccccg ggcctggcgg aggcccacca tcgagtccca ccacgtggcc atctcagatg
421cagaggactg cgtgcagctg aaccagtaca agctgcagag tgagattggc aagggtgcct
481acggtgtggt gaggctggcc tacaacgaaa gtgaagacag acactatgca atgaaagtcc
541tttccaaaaa gaagttactg aagcagtatg gctttccacg tcgccctccc ccgagagggt
601cccaggctgc ccagggagga ccagccaagc agctgctgcc cctggagcgg gtgtaccagg
661agattgccat cctgaagaag ctggaccacg tgaatgtggt caaactgatc gaggtcctgg
721atgacccagc tgaggacaac ctctatttgg ccctgcagaa ccaggcccag aatatccagt
781tagattcaac aaatatcgcc aagccccact ccctgcttcc ctctgagcag caagacagtg
841gatccacgtg ggctgcgcgc tcagtgtttg acctcctgag aaaggggccc gtcatggaag
901tgccctgtga caagcccttc tcggaggagc aagctcgcct ctacctgcgg gacgtcatcc
961tgggcctcga gtacttgcac tgccagaaga tcgtccacag ggacatcaag ccatccaacc
1021tgctcctggg ggatgatggg cacgtgaaga tcgccgactt tggcgtcagc aaccagtttg
1081aggggaacga cgctcagctg tccagcacgg cgggaacccc agcattcatg gcccccgagg
1141ccatttctga ttccggccag agcttcagtg ggaaggcctt ggatgtatgg gccactggcg
1201tcacgttgta ctgctttgtc tatgggaagt gcccgttcat cgacgatttc atcctggccc
1261tccacaggaa gatcaagaat gagcccgtgg tgtttcctga ggggccagaa atcagcgagg
1321agctcaagga cctgatcctg aagatgttag acaagaatcc cgagacgaga attggggtgc
1381cagacatcaa gttgcaccct tgggtgacca agaacgggga ggagcccctt ccttcggagg
1441aggagcactg cagcgtggtg gaggtgacag aggaggaggt taagaactca gtcaggctca
1501tccccagctg gaccacggtg atcctggtga agtccatgct gaggaagcgt tcctttggga
1561acccgtttga gccccaagca cggagggaag agcgatccat gtctgctcca ggaaacctac
1621tggtgtaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1681gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1741acctctggat ta

Download FASTA (ORF) (Full)

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