Construct: ORF ccsbBroad304_15246

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018453.1_s304c1, BRDN0000412154
Derived from:
ccsbBroadEn_15246
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LSM11 (134353)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15246
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 134353 LSM11 LSM11, U7 small nuclear RNA... NM_173491.4 99.1% 99.1% 18_19insGCCCGN;377_378delCCinsGA;381A>G
2 mouse 72290 Lsm11 U7 snRNP-specific Sm-like p... NM_028185.2 84.6% 87.9% (many diffs)
3 mouse 72290 Lsm11 U7 snRNP-specific Sm-like p... XM_011249271.2 77.1% 77.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1155
ORF length:
1086
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggaggagcgg gagcgggccc gnggggcgag gtcggctggc gccgggagcc
121ccgcgcgccc gcccagcccg cggctggatg tcagctctga cagcttcgac ccgctgctgg
181ccctgtacgc gccccgcctg cctcccattc cctaccccaa tgccccctgc ttcaacaacg
241tggcggagta cgagagcttc ctcaggaccg gagtccgggg cggcgggcgc gggcgcgggc
301gggctcgggg cgcggccgcg ggctctgggg ttcccgccgc acccgggccc tcgggcagga
361ctcgtcgccg cccggacgcg cccgccccgg accccgagcg catccagcgc ctccgccgtc
421tcatggtggc caaagaggaa ggggacgggg gagcgggagc gggccggagg ggtccgggtc
481ggagcaggaa ggcgccacgc aacgtgctca cgcgaatgcc cttgcacgaa ggcagccctc
541tgggtgaact ccatcgctgt atccgtgagg gggtgaaggt gaatgttcac atccgcactt
601tcaagggact tcggggcgtc tgtacaggct tccttgttgc attcgacaag ttctggaata
661tggcacttac tgatgtggat gagacctacc gaaaacctgt cctaggcaaa gcatatgaac
721gggattcttc actgactctc actaggctat ttgatcggct gaaacttcaa gattcctcca
781agaaggaagc agattctaag tctgcagttg aagattccac tctgtctaga tactcacaga
841catccacttg gaagttggct tcagtgtggg gaagagcaga cactggccgg ggctcacaca
901agcgttcccg ctctgtccct tcttccctgc aggcctctgc aagggaggag tccaggtcag
961agctgtcagg gaggactaca cggacagacg gctccagtgt gggaggtacc ttttccaggg
1021ctaccaccct ttccagaggc cagtcccgta agaaaaagcg aaagcccaaa gtggattacc
1081agcaggtatt cactcgacac ataaatcaga ttttcattcg aggcgagaat gtcctgctgg
1141ttcatcttgc acagttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
1201ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1261cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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