Construct: ORF ccsbBroadEn_15246
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018453.1_s300c1, BRDN0000398613
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LSM11 (134353)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 134353 | LSM11 | LSM11, U7 small nuclear RNA... | NM_173491.4 | 99.1% | 99.1% | 18_19insGCCCGN;377_378delCCinsGA;381A>G |
| 2 | mouse | 72290 | Lsm11 | U7 snRNP-specific Sm-like p... | NM_028185.2 | 84.6% | 87.9% | (many diffs) |
| 3 | mouse | 72290 | Lsm11 | U7 snRNP-specific Sm-like p... | XM_011249271.2 | 77.1% | 77.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1155
- ORF length:
- 1086
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGAGCGG GAGCGGGCCC GNGGGGcgag gtcggctggc gccgggagcc 121 ccgcgcgccc gcccagcccg cggctggatg tcagctctga cagcttcgac ccgctgctgg 181 ccctgtacgc gccccgcctg cctcccattc cctaccccaa tgccccctgc ttcaacaacg 241 tggcggagta cgagagcttc ctcaggaccg gagtccgggg cggcgggcgc gggcgcgggc 301 gggctcgggg cgcggccgcg ggctctgggg ttcccgccgc acccgggccc tcgggcagga 361 ctcgtcgccg cccggacgcg cccgccccgg accccgagcg catccagcgc ctccgccgtc 421 tcatggtggc caaagaggaa ggggacgggG GAGCGGGAGC GGGCCGGAGG GGTCCGGGTC 481 GGAGCAGGAA GGCGCCACGC AACGTGCTCA CGCGAATGCC CTTGCACGAA GGCAGCCCTC 541 TGGGTGAACT CCATCGCTGT ATCCGTGAGG GGGTGAAGGT GAATGTTCAC ATCCGCACTT 601 TCAAGGGACT TCGGGGCGTC TGTACAGGCT TCCTTGTTGC ATTCGACAAG TTCTGGAATA 661 TGGCACTTAC TGATGTGGAT GAGACCTACC GAAAACCTGT CCTAGGCAAA GCATATGAAC 721 GGGATTCTTC ACTGACTCTC ACTAGGCTAT TTGATCGGCT GAAACTTCAA GATTCCTCCA 781 AGAAGGAAGC AGATTCTAAG TCTGCAGTTG AAGATTCCAC TCTGTCTAGA TACTCACAGA 841 CATCCACTTG GAAGTTGGCT TCAGTGTGGG GAAGAGCAGA CACTGGCCGG GGCTCACACA 901 AGCGTTCCCG CTCTGTCCCT TCTTCCCTGC AGGCCTCTGC AAGGGAGGAG TCCAGGTCAG 961 AGCTGTCAGG GAGGACTACA CGGACAGACG GCTCCAGTGT GGGAGGTACC TTTTCCAGGG 1021 CTACCACCCT TTCCAGAGGC CAGTCCCGTA AGAAAAAGCG AAAGCCCAAA GTGGATTACC 1081 AGCAGGTATT CACTCGACAC ATAAATCAGA TTTTCATTCG AGGCGAGAAT GTCCTGCTGG 1141 TTCATCTTGC ACAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1201 tatcaatttg ttgcaacgaa c