Construct: ORF ccsbBroad304_15260
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017251.1_s304c1, BRDN0000411903
- Derived from:
- ccsbBroadEn_15260
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF569 (148266)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15260
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148266 | ZNF569 | zinc finger protein 569 | NM_001330482.2 | 100% | 100% | |
| 2 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026379.1 | 100% | 100% | |
| 3 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026380.1 | 100% | 100% | |
| 4 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026382.2 | 100% | 100% | |
| 5 | human | 148266 | ZNF569 | zinc finger protein 569 | NM_152484.3 | 76.8% | 76.8% | 1_477del |
| 6 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_011526539.3 | 76.8% | 76.8% | 1_477del |
| 7 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026376.1 | 76.8% | 76.8% | 1_477del |
| 8 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026377.2 | 76.8% | 76.8% | 1_477del |
| 9 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723046.2 | 74.2% | 74.2% | 1_549del |
| 10 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723047.4 | 74.2% | 74.2% | 1_549del |
| 11 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723048.4 | 74.2% | 74.2% | 1_549del |
| 12 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_011526538.3 | 74.2% | 74.2% | 1_549del |
| 13 | mouse | 72723 | Zfp74 | zinc finger protein 74 | NM_178384.3 | 64.2% | 70.2% | (many diffs) |
| 14 | mouse | 72723 | Zfp74 | zinc finger protein 74 | XM_006540384.3 | 64.2% | 70.2% | (many diffs) |
| 15 | mouse | 72723 | Zfp74 | zinc finger protein 74 | XM_006540385.3 | 64.2% | 70.2% | (many diffs) |
| 16 | mouse | 72723 | Zfp74 | zinc finger protein 74 | XM_011250720.2 | 64.2% | 70.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1650
- ORF length:
- 1581
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gagaaaggag cattgtgaat ataatgaacc tgtgaaatca tatggtaata 121 gctcatccca ttttgtcatt acccccttta agtgtaatca ttgtggaaaa ggcttcaatc 181 agactttgga cctcatcaga catctgagaa ttcatactgg agagaagccc tatgaatgta 241 gtaactgtag aaaagccttc agtcacaagg aaaaacttat taaacattat aaaattcaca 301 gtagggagca gtcttacaaa tgtaatgaat gtggtaaagc tttcattaaa atgtcaaatc 361 tcattagaca tcaaagaatt catactggag agaagcccta tgcatgtaag gaatgtgaga 421 agtccttcag ccagaaatca aatcttattg atcatgaaaa aattcatact ggagagaaac 481 cttatgaatg taatgagtgt ggaaaagcat tcagccagaa gcaaagcctc attgcacatc 541 agaaagttca tactggggag aaaccttatg catgtaatga atgtggtaaa gccttccctc 601 gaattgcatc ccttgctctt catatgagaa gtcatacagg agaaaaacct tataaatgtg 661 ataaatgtgg taaagccttc tctcagtttt ccatgcttat tatacatgtt agaattcata 721 caggtgaaaa accctatgaa tgtaatgagt gtggaaaagc cttctctcaa agctcagccc 781 ttactgtaca tatgagaagt cacactggtg agaaacccta tgaatgtaag gaatgcagaa 841 aagccttcag ccacaagaaa aacttcatta cacaccagaa aattcatact agagagaaac 901 cttatgagtg taatgaatgt gggaaagctt ttatacagat gtcaaatctt gttagacacc 961 agagaattca tactggggaa aaaccctata tatgtaagga atgtgggaaa gcctttagcc 1021 agaaatcaaa tctcattgct catgaaaaaa ttcattctgg agagaaaccc tatgaatgca 1081 atgaatgtgg taaagccttc agccaaaagc aaaacttcat tacacatcaa aaagttcata 1141 ctggagagaa accttatgat tgtaatgaat gtggtaaagc cttctctcaa attgcatccc 1201 ttacccttca tttgagaagt catacagggg aaaagcctta tgaatgtgat aaatgtggta 1261 aagccttctc tcagtgctca ctgcttaatt tacatatgag aagtcacaca ggtgagaagc 1321 cctatgtatg taatgaatgt gggaaagcct tctctcaaag aacttccctt attgtgcaca 1381 tgagaggcca tacaggtgaa aaaccctatg aatgtaataa atgtggaaaa gccttctccc 1441 aaagctcatc ccttactata catatacgag gacatacagg tgagaaaccc ttcgactgta 1501 gtaaatgtgg aaaagccttc tctcaaatct catctcttac ccttcatatg agaaaacata 1561 caggtgagaa gccctatcac tgtattgagt gtggcaaggc tttcagccaa aagtcgcacc 1621 ttgttagaca ccagagaatt catactcatt tgccaacttt cttgtacaaa gtggttggta 1681 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 1741 ggtggcgcgt taagtcgaca atcaacctct ggatta