Construct: ORF ccsbBroad304_15385

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010980.1_s304c1, BRDN0000403606
Derived from:
ccsbBroadEn_15385
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLK3 (1198)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15385
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1198 CLK3 CDC like kinase 3 NM_003992.4 95.3% 95.3% 470_538del
2 human 1198 CLK3 CDC like kinase 3 NM_001130028.1 73.1% 73.1% 1_444del;914_982del
3 mouse 102414 Clk3 CDC-like kinase 3 XM_006510739.3 88% 94% (many diffs)
4 mouse 102414 Clk3 CDC-like kinase 3 XM_017313060.1 88% 94% (many diffs)
5 mouse 102414 Clk3 CDC-like kinase 3 NM_007713.4 67.6% 72.2% (many diffs)
6 mouse 102414 Clk3 CDC-like kinase 3 XM_017313061.1 54.2% 57.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1467
ORF length:
1401
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca tcactgtaag cgataccgct cccctgaacc agacccgtac ctgagctacc
121gatggaagag gaggaggtcc tacagtcggg aacatgaagg gagactgcga tacccgtccc
181gaagggagcc tcccccacga agatctcggt ccagaagcca tgaccgcctg ccctaccaga
241ggaggtaccg ggagcgccgt gacagcgata cataccggtg tgaagagcgg agcccatcct
301ttggagagga ctactatgga ccttcacgtt ctcgtcatcg tcggcgatcg cgggagaggg
361ggccataccg gacccgcaag catgcccacc actgccacaa acgccgcacc aggtcttgta
421gcagcgcctc ctcgagaagc caacagagca gtaagcgcag cagccggagt gtggaagatg
481acaaggaggg tcacctggtg tgccggatcg gcgattggct ccaagagcga tatgagtctc
541aggttgccct gaagatcatc cgcaacgtgg gcaagtaccg ggaggctgcc cggctagaaa
601tcaacgtgct caaaaaaatc aaggagaagg acaaagaaaa caagttcctg tgtgtcttga
661tgtctgactg gttcaacttc cacggtcaca tgtgcatcgc ctttgagctc ctgggcaaga
721acacctttga gttcctgaag gagaataact tccagcctta ccccctacca catgtccggc
781acatggccta ccagctctgc cacgccctta gatttctgca tgagaatcag ctgacccata
841cagacttgaa accagagaac atcctgtttg tgaattctga gtttgaaacc ctctacaatg
901agcacaagag ctgtgaggag aagtcagtga agaacaccag catccgagtg gctgactttg
961gcagtgccac atttgaccat gagcaccaca ccaccattgt ggccacccgt cactatcgcc
1021cgcctgaggt gatccttgag ctgggctggg cacagccctg tgacgtctgg agcattggct
1081gcattctctt tgagtactac cggggcttca cactcttcca gacccacgaa aaccgagagc
1141acctggtgat gatggagaag atcctagggc ccatcccatc acacatgatc caccgtacca
1201ggaagcagaa atatttctac aaagggggcc tagtttggga tgagaacagc tctgacggcc
1261ggtatgtgaa ggagaactgc aaacctctga agagttacat gctccaagac tccctggagc
1321acgtgcagct gtttgacctg atgaggagga tgttagaatt tgaccctgcc cagcgcatca
1381cactggccga ggccctgctg caccccttct ttgctggcct gacccctgag gagcggtcct
1441tccacaccag ccgcaaccca agcagatnnc caactttctt gtacaaagtg gttggtaagc
1501ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1561ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)