Construct: ORF ccsbBroad304_15399

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013857.1_s304c1, BRDN0000402478
Derived from:
ccsbBroadEn_15399
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DYNC1I1 (1780)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15399
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1780 DYNC1I1 dynein cytoplasmic 1 interm... NM_001278421.1 99.8% 99.8% 1431C>A;1491G>T;1734G>A
2 human 1780 DYNC1I1 dynein cytoplasmic 1 interm... NM_001135557.1 97.1% 97.1% (many diffs)
3 human 1780 DYNC1I1 dynein cytoplasmic 1 interm... NM_004411.4 96.7% 96.7% (many diffs)
4 human 1780 DYNC1I1 dynein cytoplasmic 1 interm... NM_001135556.1 94.1% 94.1% (many diffs)
5 human 1780 DYNC1I1 dynein cytoplasmic 1 interm... NM_001278422.1 92.2% 90.1% (many diffs)
6 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... NM_001191023.1 91.2% 97.9% (many diffs)
7 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... NM_001191025.1 88.5% 95.2% (many diffs)
8 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... XM_006504982.3 88.4% 94.8% (many diffs)
9 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... NM_001191027.1 86.8% 93.4% (many diffs)
10 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... NM_010063.4 85.8% 92.2% (many diffs)
11 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... NM_001191026.1 84.1% 90.5% (many diffs)
12 mouse 13426 Dync1i1 dynein cytoplasmic 1 interm... XM_017321380.1 84.1% 90.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1941
ORF length:
1875
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tgacaaaagt gacttaaaag ctgagctaga gcgcaaaaag cagcgcttag
121cacagataag agaagagaag aaacggaagg aagaggagag gaaaaagaaa gaggctgata
181tgcagcagaa gaaagaaccc gttcaggacg actctgatct ggatcgcaaa cgacgagaga
241cagaggcttt gctgcaaagc attggtatct caccggagcc gcctctagtg cagccgctgc
301attttttaac atgggatacc tgttattttc attatttagt cccaacccct atgtctccct
361cctcgaaatc agtgagcact cccagtgaag ctggaagcca agactcaggc gatctggggc
421cattaacaag aagaagactg cataaactgg gcgtgtcaaa ggtcacccaa gtggatttcc
481tgccaaggga agtagtgtcc tactcaaagg agacccagac tcctcttgcc acgcatcagt
541ctgaagagga tgaggaagat gaggaaatgg tggaatctaa agttggccag gactcagaac
601tggaaaatca ggacaaaaaa caggaagtga aggaagcccc tccaagagag ttgacagagg
661aagaaaaaca gcagatcctt cattcagagg aatttctcat cttttttgac cggacaatac
721gggtaattga aagagccctg gctgaagatt ccgacatctt ttttgactac agcggccgag
781agttagagga aaaagatggg gatgttcagg ctggagccaa tctttctttc aatcgtcagt
841tctatgatga acattggtcc aagcatcgag tggtcacttg tatggactgg tccctccagt
901accctgagct gatggtggct tcttacaaca acaatgaaga tgctccccat gaaccagatg
961gagtggcctt ggtttggaac atgaagttta agaaaaccac accagaatac gtcttccact
1021gtcagtcctc tgtgatgtcg gtctgcttcg cccgtttcca tcctaacttg gtggttggtg
1081ggacttactc gggccagatt gtcctctggg acaatcgcag tcatcgaagg actccagtgc
1141agcggacacc cttatcagct gctgcacaca cgcatcccgt gtactgtgta aatgttgttg
1201ggacccagaa tgctcataac ctcatcactg tctccactga tggcaaaatg tgttcctgga
1261gcctggacat gctctcaact ccacaggaga gcatggagct ggtgtacaat aagtccaagc
1321ctgtcgctgt taccggaatg gctttcccaa cgggagacgt caataacttc gtggttggca
1381gtgaggaagg tacagtctac acggcttgtc gtcatggaag caaagcaggt attggtgagg
1441tctttgaagg tcaccaaggg ccagtgacag gaattaactg ccacatggca gtgggaccaa
1501tcgacttttc tcacctgttt gtcacatcat catttgactg gactgtcaaa ctgtgtacca
1561ccaagcacaa caagccgctc tactcctttg aagacaatgc agactatgtg tacgatgtca
1621tgtggtcccc cgtgcatcct gcgctttttg cctgcgtgga cgggatgggg cgcttggacc
1681tctggaacct caacaatgac accgaggttc caacagcaag tgtggccatt gagggggcat
1741ccgccctaaa ccgtgttcgt tgggcccaag ctggcaaaga agttgctgtt ggggactcag
1801aaggccgtat ttgggtctat gacgttggag agcttgcagt tccccacaat gatgaatgga
1861cccgatttgc caggaccctt gtggaaattc gtgctaacag agctgatagc gaggaggaag
1921gcactgttga gttatctgcc tnnccaactt tcttgtacaa agtggttggt aagcctatcc
1981ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2041ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)