Construct: ORF ccsbBroad304_15438
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014582.1_s304c1, BRDN0000398827
- Derived from:
- ccsbBroadEn_15438
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GTF2H2 (2966)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15438
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364568.1 | 45.6% | 44% | (many diffs) |
| 2 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364569.1 | 45.6% | 44% | (many diffs) |
| 3 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364570.1 | 45.6% | 44% | (many diffs) |
| 4 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364571.1 | 45.6% | 44% | (many diffs) |
| 5 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_011543615.1 | 42.3% | 40.4% | (many diffs) |
| 6 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364567.1 | 41.5% | 40% | (many diffs) |
| 7 | human | 2966 | GTF2H2 | general transcription facto... | NM_001515.3 | 41.5% | 40% | (many diffs) |
| 8 | human | 2966 | GTF2H2 | general transcription facto... | XM_017009403.2 | 41.5% | 40% | (many diffs) |
| 9 | human | 2966 | GTF2H2 | general transcription facto... | XM_017009404.1 | 41.5% | 40% | (many diffs) |
| 10 | human | 2966 | GTF2H2 | general transcription facto... | XM_017009406.2 | 41.5% | 40% | (many diffs) |
| 11 | human | 730394 | GTF2H2C_2 | GTF2H2 family member C, copy 2 | NM_001042490.4 | 41.3% | 39.4% | (many diffs) |
| 12 | human | 728340 | GTF2H2C | GTF2H2 family member C | NM_001098728.2 | 41.3% | 39.4% | (many diffs) |
| 13 | human | 730394 | GTF2H2C_2 | GTF2H2 family member C, copy 2 | NM_001354437.1 | 41.3% | 39.4% | (many diffs) |
| 14 | human | 730394 | GTF2H2C_2 | GTF2H2 family member C, copy 2 | NM_001354438.1 | 41.3% | 39.4% | (many diffs) |
| 15 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_005248588.4 | 41.3% | 39.4% | (many diffs) |
| 16 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_005248590.3 | 41.3% | 39.4% | (many diffs) |
| 17 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_006714688.4 | 41.3% | 39.4% | (many diffs) |
| 18 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364573.1 | 30% | 28.4% | (many diffs) |
| 19 | human | 2966 | GTF2H2 | general transcription facto... | NM_001364572.1 | 27.7% | 26.1% | (many diffs) |
| 20 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_005248592.3 | 27.1% | 25.3% | (many diffs) |
| 21 | human | 2966 | GTF2H2 | general transcription facto... | XM_024446037.1 | 27% | 25.5% | (many diffs) |
| 22 | human | 730394 | GTF2H2C_2 | GTF2H2 family member C, copy 2 | NM_001354439.1 | 26.9% | 25% | (many diffs) |
| 23 | human | 728340 | GTF2H2C | GTF2H2 family member C | XM_017009804.1 | 26.9% | 25% | (many diffs) |
| 24 | human | 653238 | GTF2H2B | general transcription facto... | NR_033417.1 | 10.2% | (many diffs) | |
| 25 | mouse | 23894 | Gtf2h2 | general transcription facto... | NM_022011.4 | 37.2% | 39.3% | (many diffs) |
| 26 | mouse | 23894 | Gtf2h2 | general transcription facto... | NM_001360706.1 | 37% | 39.1% | (many diffs) |
| 27 | mouse | 23894 | Gtf2h2 | general transcription facto... | XM_006517662.3 | 37% | 39.1% | (many diffs) |
| 28 | mouse | 23894 | Gtf2h2 | general transcription facto... | XR_873759.3 | 27.5% | (many diffs) | |
| 29 | mouse | 23894 | Gtf2h2 | general transcription facto... | NR_153794.1 | 26.4% | (many diffs) | |
| 30 | mouse | 23894 | Gtf2h2 | general transcription facto... | XR_873756.3 | 26.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 561
- ORF length:
- 495
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga tgaagaacct gaaagaacta agcgatggga aggaggctat gaaagaacat 121 gggagattct taaagaagat gaatctggat cacttaaagc tacaatagaa gacattctat 181 tcaaggcaaa gagaaaaaga gtatttgagc accatggaca agttcgactt ggaatgatgc 241 gccaccttta tgtggtagta gatggatcaa gaacaatgga agaccaagat ttaaagccta 301 atagactgac gtgtacttta aagttgttgg aatactttgt agaggaatat tttgatcaaa 361 atcctattag tcagattgga ataattgtaa ctaagagtaa aagagctgaa aaattgactg 421 aactttcagg aaacccaaga aaacatataa cgtctttgaa gaaagctgtg gatatgacct 481 gccatggaga gccatctctt tataattccc taagcatagc tatgcagact ctaaagttag 541 tattatacat tatgtataat tnnccaactt tcttgtacaa agtggttggt aagcctatcc 601 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 661 ttaagtcgac aatcaacctc tggatta